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Örjan Smedby
Researcher at Royal Institute of Technology
Publications - 233
Citations - 6713
Örjan Smedby is an academic researcher from Royal Institute of Technology. The author has contributed to research in topics: Segmentation & Image segmentation. The author has an hindex of 37, co-authored 222 publications receiving 5401 citations. Previous affiliations of Örjan Smedby include Uppsala University Hospital & Linköping University.
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Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
Spyridon Bakas,Mauricio Reyes,Andras Jakab,Stefan Bauer,Markus Rempfler,Alessandro Crimi,Russell T. Shinohara,Christoph Berger,Sung Min Ha,Martin Rozycki,Marcel Prastawa,Esther Alberts,Jana Lipkova,John Freymann,John Freymann,Justin Kirby,Justin Kirby,Michel Bilello,Hassan M. Fathallah-Shaykh,Roland Wiest,Jan S. Kirschke,Benedikt Wiestler,Rivka R. Colen,Aikaterini Kotrotsou,Pamela LaMontagne,Daniel S. Marcus,Mikhail Milchenko,Arash Nazeri,Marc-André Weber,Abhishek Mahajan,Ujjwal Baid,Elizabeth R. Gerstner,Dongjin Kwon,Gagan Acharya,Manu Agarwal,M. S. Alam,Alberto Albiol,Antonio Albiol,F. Albiol,Varghese Alex,Nigel M. Allinson,Pedro H. A. Amorim,Abhijit Amrutkar,Ganesh Anand,Simon Andermatt,Tal Arbel,Pablo Arbeláez,Aaron Avery,Muneeza Azmat,B. Pranjal,Wenjia Bai,Subhashis Banerjee,Subhashis Banerjee,Bill Barth,Thomas Batchelder,Kayhan Batmanghelich,Enzo Battistella,Enzo Battistella,Andrew Beers,Mikhail Belyaev,Martin Bendszus,Eze Benson,Jose Bernal,H. N. Bharath,George Biros,Sotirios Bisdas,James M. Brown,Mariano Cabezas,Shilei Cao,Jorge Cardoso,Eric Carver,Adrià Casamitjana,Laura Silvana Castillo,Marcel Catà,Philippe C. Cattin,Albert Cerigues,Vinicius S. Chagas,Siddhartha Chandra,Yi-Ju Chang,Shiyu Chang,Ken Chang,Joseph Chazalon,Shengcong Chen,Wei Chen,Jefferson W. Chen,Zhaolin Chen,Kun Cheng,Ahana Roy Choudhury,Roger Chylla,Albert Clèrigues,Steven Colleman,Ramiro German Rodriguez Colmeiro,Ramiro German Rodriguez Colmeiro,Marc Combalia,Anthony Costa,Xiaomeng Cui,Zhenzhen Dai,Lutao Dai,Laura Alexandra Daza,Eric Deutsch,Changxing Ding,Chao Dong,Shidu Dong,Wojciech Dudzik,Zach Eaton-Rosen,Gary F. Egan,Guilherme Escudero,Théo Estienne,Théo Estienne,Richard M. Everson,Jonathan Fabrizio,Yong Fan,Longwei Fang,Xue Feng,Enzo Ferrante,Lucas Fidon,Martin H. Fischer,Andrew P. French,Naomi Fridman,Huan Fu,David Fuentes,Yaozong Gao,Evan Gates,David T. Gering,Amir Gholami,Willi Gierke,Ben Glocker,Mingming Gong,Mingming Gong,Sandra González-Villà,Thomas Grosges,Yuanfang Guan,Sheng Guo,Sudeep Gupta,Woo-Sup Han,Il Song Han,Konstantin Harmuth,Huiguang He,Aura Hernández-Sabaté,Evelyn Herrmann,Naveen Himthani,Winston H. Hsu,Cheyu Hsu,Hu Xiaojun,Xiaobin Hu,Yan Hu,Yifan Hu,Rui Hua,Teng-Yi Huang,Weilin Huang,Sabine Van Huffel,Quan Huo,Vivek Hv,Khan M. Iftekharuddin,Fabian Isensee,Mobarakol Islam,Aaron S. Jackson,Sachin Jambawalikar,Andrew Jesson,Weijian Jian,Peter H. Jin,V Jeya Maria Jose,V Jeya Maria Jose,Alain Jungo,Bernhard Kainz,Konstantinos Kamnitsas,Po-Yu Kao,Ayush Karnawat,Thomas Kellermeier,Adel Kermi,Kurt Keutzer,Mohamed Tarek Khadir,Mahendra Khened,Philipp Kickingereder,Geena Kim,Nik King,Haley Knapp,Urspeter Knecht,Lisa Kohli,Deren Kong,Xiangmao Kong,Simon Koppers,Avinash Kori,Ganapathy Krishnamurthi,Egor Krivov,Piyush Kumar,Kaisar Kushibar,Dmitrii Lachinov,Dmitrii Lachinov,Tryphon Lambrou,Joon Lee,Chengen Lee,Yuehchou Lee,Matthew C. H. Lee,Szidónia Lefkovits,László Lefkovits,James Levitt,Tengfei Li,Hongwei Li,Wenqi Li,Wenqi Li,Hongyang Li,Xiaochuan Li,Yuexiang Li,Heng Li,Zhenye Li,Xiaoyu Li,Zeju Li,XiaoGang Li,Zheng-Shen Lin,Fengming Lin,Pietro Liò,C Liu,Boqiang Liu,Xiang Liu,Mingyuan Liu,Ju Liu,Luyan Liu,Xavier Lladó,Marc Moreno Lopez,Pablo Ribalta Lorenzo,Zhentai Lu,Lin Luo,Zhigang Luo,Jun Ma,Kai Ma,Thomas Mackie,Anant Madabushi,Issam Mahmoudi,Klaus H. Maier-Hein,Pradipta Maji,C. P. Mammen,Andreas Mang,B.S. Manjunath,M. Marcinkiewicz,Steven McDonagh,Stephen J. McKenna,Richard McKinley,Miriam Mehl,Sachin Mehta,Raghav Mehta,Raphael Meier,Christoph Meinel,Dorit Merhof,Craig H. Meyer,Robert F. Miller,Sushmita Mitra,Aliasgar Moiyadi,David Molina-García,Miguel Monteiro,Grzegorz Mrukwa,Andriy Myronenko,Jakub Nalepa,Thuyen Ngo,Dong Nie,Holly Ning,Chen Niu,Nicholas Nuechterlein,Eric K. Oermann,Arlindo L. Oliveira,Arlindo L. Oliveira,Diego D. C. Oliveira,Arnau Oliver,Alexander F. I. Osman,Yu-Nian Ou,Sebastien Ourselin,Nikos Paragios,Moo Sung Park,Brad Paschke,J. Gregory Pauloski,Kamlesh Pawar,Nick Pawlowski,Linmin Pei,Suting Peng,Silvio M. Pereira,Julián Pérez-Beteta,Víctor M. Pérez-García,Simon Pezold,Bao Pham,Ashish Phophalia,Gemma Piella,G. N. Pillai,Marie Piraud,Maxim Pisov,Anmol Popli,Michael P. Pound,Reza Pourreza,Prateek Prasanna,Vesna Prkovska,Tony P. Pridmore,Santi Puch,Elodie Puybareau,Buyue Qian,Xu Qiao,Martin Rajchl,Swapnil Rane,Michael Rebsamen,Hongliang Ren,Xuhua Ren,Karthik Revanuru,Mina Rezaei,Oliver Rippel,Luis Carlos Rivera,Charlotte Robert,Bruce R. Rosen,Daniel Rueckert,Mohammed Safwan,Mostafa Salem,Joaquim Salvi,Irina Sánchez,Heitor M. Santos,Emmett Sartor,Dawid Schellingerhout,Klaudius Scheufele,Matthew R. Scott,Artur A. Scussel,Sara Sedlar,Juan Pablo Serrano-Rubio,N. Jon Shah,Nameetha Shah,Mazhar Shaikh,B. Uma Shankar,Zeina A. Shboul,Haipeng Shen,Dinggang Shen,Linlin Shen,Haocheng Shen,Varun Shenoy,Feng Shi,Hyung Eun Shin,Hai Shu,Diana M. Sima,Matthew Sinclair,Örjan Smedby,James Snyder,Mohammadreza Soltaninejad,Guidong Song,Mehul Soni,Jean Stawiaski,Shashank Subramanian,Li Sun,Roger Sun,Roger Sun,Jiawei Sun,Kay Sun,Yu Sun,Guoxia Sun,Shuang Sun,Yannick Suter,László Szilágyi,Sanjay N. Talbar,Dacheng Tao,Zhongzhao Teng,Siddhesh Thakur,Meenakshi Thakur,Sameer Tharakan,Pallavi Tiwari,Guillaume Tochon,Tuan Tran,Yuhsiang M. Tsai,Kuan-Lun Tseng,Tran Anh Tuan,Vadim Turlapov,Nicholas J. Tustison,Maria Vakalopoulou,Sergi Valverde,Rami Vanguri,Evgeny Vasiliev,Jonathan Ventura,Luis Vera,Tom Vercauteren,Tom Vercauteren,C. A. Verrastro,Lasitha Vidyaratne,Verónica Vilaplana,Ajeet Vivekanandan,Guotai Wang,Guotai Wang,Qian Wang,Chiatse J. Wang,Weichung Wang,Duo Wang,Ruixuan Wang,Yuanyuan Wang,Chunliang Wang,Ning Wen,Xin Wen,Leon Weninger,Wolfgang Wick,Shaocheng Wu,Qiang Wu,Yihong Wu,Yong Xia,Yanwu Xu,Xiaowen Xu,Peiyuan Xu,Tsai-Ling Yang,Xiaoping Yang,Hao-Yu Yang,Junlin Yang,Haojin Yang,Guang Yang,Hongdou Yao,Xujiong Ye,Changchang Yin,Brett Young-Moxon,Jinhua Yu,Xiangyu Yue,Songtao Zhang,Angela Zhang,Kun Zhang,Xuejie Zhang,Lichi Zhang,Xiaoyue Zhang,Yazhuo Zhang,Lei Zhang,Jianguo Zhang,Xiang Zhang,Tianhao Zhang,Sicheng Zhao,Yu Zhao,Xiaomei Zhao,Liang Zhao,Liang Zhao,Yefeng Zheng,Liming Zhong,Chenhong Zhou,Xiaobing Zhou,Fan Zhou,Hongtu Zhu,Jin Zhu,Ying Zhuge,Weiwei Zong,Jayashree Kalpathy-Cramer,Keyvan Farahani,Christos Davatzikos,Koen Van Leemput,Koen Van Leemput,Bjoern H. Menze +438 more
TL;DR: This study assesses the state-of-the-art machine learning methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018, and investigates the challenge of identifying the best ML algorithms for each of these tasks.
Journal ArticleDOI
Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms
Michiel Schaap,Coert Metz,Theo van Walsum,Alina G. van der Giessen,Annick C. Weustink,Nico R. Mollet,Christian Bauer,Hrvoje Bogunovic,Carlos Castro,Xiang Deng,Engin Dikici,Thomas F. O'Donnell,Michel Frenay,Ola Friman,Marcela Hernández Hoyos,Pieter H. Kitslaar,Karl Krissian,Caroline Kühnel,Miguel Luengo-Oroz,Maciej Orkisz,Örjan Smedby,Martin Styner,Andrzej Szymczak,Huseyin Tek,Chunliang Wang,Simon K. Warfield,Sebastian Zambal,Yong Zhang,Gabriel P. Krestin,Wiro J. Niessen,Wiro J. Niessen +30 more
TL;DR: A standardized evaluation methodology and reference database for the quantitative evaluation of coronary artery centerline extraction algorithms and a database containing 32 cardiac CTA datasets with corresponding reference standard is described and made available.
Journal ArticleDOI
MRBrainS challenge: online evaluation framework for brain image segmentation in 3T MRI scans
Adriënne M. Mendrik,Koen L. Vincken,Hugo J. Kuijf,Marcel Breeuwer,Willem H. Bouvy,Jeroen de Bresser,Amir Alansary,Marleen de Bruijne,Aaron Carass,Ayman El-Baz,Amod Jog,Ranveer Katyal,Ali R. Khan,Fedde van der Lijn,Qaiser Mahmood,Ryan Mukherjee,Annegreet van Opbroek,Sahil Paneri,Sérgio Pereira,Mikael Persson,Martin Rajchl,Duygu Sarikaya,Örjan Smedby,Carlos A. Silva,Henri A. Vrooman,Saurabh Vyas,Chunliang Wang,Liang Zhao,Geert Jan Biessels,Max A. Viergever +29 more
TL;DR: The MRBrainS evaluation framework provides an objective and direct comparison of all evaluated algorithms and can aid in selecting the best performing method for the segmentation goal at hand.
Journal ArticleDOI
A Multi-Organ Nucleus Segmentation Challenge
Neeraj Kumar,Ruchika Verma,Deepak Anand,Yanning Zhou,Omer Fahri Onder,E. D. Tsougenis,Hao Chen,Pheng-Ann Heng,Jiahui Li,Zhiqiang Hu,Yunzhi Wang,Navid Alemi Koohbanani,Mostafa Jahanifar,Neda Zamani Tajeddin,Ali Gooya,Nasir M. Rajpoot,Xuhua Ren,Sihang Zhou,Qian Wang,Dinggang Shen,Cheng-Kun Yang,Chi-Hung Weng,Wei-Hsiang Yu,Chao-Yuan Yeh,Shuang Yang,Shuoyu Xu,Pak-Hei Yeung,Peng Sun,Amirreza Mahbod,Gerald Schaefer,Isabella Ellinger,Rupert Ecker,Örjan Smedby,Chunliang Wang,Benjamin Chidester,That-Vinh Ton,Minh-Triet Tran,Jian Ma,Minh N. Do,Simon Graham,Quoc Dang Vu,Jin Tae Kwak,Akshaykumar Gunda,Raviteja Chunduri,Corey Hu,Xiaoyang Zhou,Dariush Lotfi,Reza Safdari,Antanas Kascenas,Alison O'Neil,Dennis Eschweiler,Johannes Stegmaier,Yanping Cui,Baocai Yin,Kailin Chen,Xinmei Tian,Philipp Gruening,Erhardt Barth,Elad Arbel,Itay Remer,Amir Ben-Dor,Ekaterina Sirazitdinova,Matthias Kohl,Stefan Braunewell,Yuexiang Li,Xinpeng Xie,Linlin Shen,Jun Ma,Krishanu Das Baksi,Mohammad Azam Khan,Jaegul Choo,Adrián Colomer,Valery Naranjo,Linmin Pei,Khan M. Iftekharuddin,Kaushiki Roy,Debotosh Bhattacharjee,Anibal Pedraza,Maria Gloria Bueno,Sabarinathan Devanathan,Saravanan Radhakrishnan,Praveen Koduganty,Zihan Wu,Guanyu Cai,Xiaojie Liu,Yuqin Wang,Amit Sethi +86 more
TL;DR: Several of the top techniques compared favorably to an individual human annotator and can be used with confidence for nuclear morphometrics as well as heavy data augmentation in the MoNuSeg 2018 challenge.
Journal ArticleDOI
Web-Based Interactive 3D Visualization as a Tool for Improved Anatomy Learning
TL;DR: The results indicate that, in general, students' attitudes towards the EVA‐program were positive when compared with anatomy textbooks, but results were not the same with dissections.