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Yingrui Li
Researcher at Beijing Institute of Genomics
Publications - 182
Citations - 90736
Yingrui Li is an academic researcher from Beijing Institute of Genomics. The author has contributed to research in topics: Genome & Exome sequencing. The author has an hindex of 100, co-authored 182 publications receiving 76181 citations. Previous affiliations of Yingrui Li include South China University of Technology & University of Southern Denmark.
Papers
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Journal ArticleDOI
Whole-genome sequence variation, population structure and demographic history of the Dutch population
Laurent C. Francioli,Androniki Menelaou,Sara L. Pulit,Freerk van Dijk,Pier Francesco Palamara,Clara C. Elbers,Pieter B. Neerincx,Kai Ye,Kai Ye,Victor Guryev,Wigard P. Kloosterman,Patrick Deelen,Abdel Abdellaoui,Elisabeth M. van Leeuwen,Mannis van Oven,Martijn Vermaat,Mingkun Li,Jeroen F. J. Laros,Lennart C. Karssen,Alexandros Kanterakis,Najaf Amin,Jouke-Jan Hottenga,Eric-Wubbo Lameijer,Mathijs Kattenberg,Martijn Dijkstra,Heorhiy Byelas,Jessica van Setten,Barbera D. C. van Schaik,Jan Bot,Isaac J. Nijman,Ivo Renkens,Tobias Marschall,Alexander Schönhuth,Jayne Y. Hehir-Kwa,Robert E. Handsaker,Robert E. Handsaker,Paz Polak,Mashaal Sohail,Mashaal Sohail,Dana Vuzman,Fereydoun Hormozdiari,David van Enckevort,Hailiang Mei,Vyacheslav Koval,Matthijs Moed,K. Joeri van der Velde,Fernando Rivadeneira,Fernando Rivadeneira,Fernando Rivadeneira,Karol Estrada,Carolina Medina-Gomez,Aaron Isaacs,Aaron Isaacs,Steven A. McCarroll,Marian Beekman,Anton J. M. de Craen,H. Eka D. Suchiman,Albert Hofman,Ben A. Oostra,André G. Uitterlinden,Gonneke Willemsen,Mathieu Platteel,Jan H. Veldink,Leonard H. van den Berg,Steven J. Pitts,Shobha Potluri,Purnima Sundar,David R. Cox,David R. Cox,Shamil R. Sunyaev,Johan T. den Dunnen,Mark Stoneking,Peter de Knijff,Manfred Kayser,Qibin Li,Yingrui Li,Yuanping Du,Ruoyan Chen,Hongzhi Cao,Ning Li,Sujie Cao,Jun Wang,Jasper A. Bovenberg,Itsik Pe'er,P. Eline Slagboom,Cornelia M. van Duijn,Dorret I. Boomsma,Gert-Jan B. van Ommen,Paul I.W. de Bakker,Paul I.W. de Bakker,Morris A. Swertz,Cisca Wijmenga +91 more
TL;DR: The Genome of the Netherlands (GoNL) Project is described, in which the whole genomes of 250 Dutch parent-offspring families were sequenced and a haplotype map of 20.4 million single-nucleotide variants and 1.2 million insertions and deletions were constructed.
Journal ArticleDOI
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor
Xun Xu,Yong Hou,Xuyang Yin,Li Bao,Aifa Tang,Luting Song,Fuqiang Li,Shirley Tsang,Kui Wu,Hanjie Wu,Weiming He,Liang Zeng,Manjie Xing,Renhua Wu,Hui Jiang,Xiao Liu,Dandan Cao,Guangwu Guo,Xueda Hu,Yaoting Gui,Zesong Li,Wenyue Xie,Xiaojuan Sun,Min Shi,Zhiming Cai,Zhiming Cai,Bin Wang,Meiming Zhong,Jingxiang Li,Zuhong Lu,Ning Gu,Xiuqing Zhang,Laurie Goodman,Lars Bolund,Jian Wang,Huanming Yang,Karsten Kristiansen,Michael Dean,Yingrui Li,Jun Wang +39 more
TL;DR: The pilot study demonstrates that ccRCC may be more genetically complex than previously thought and provides information that can lead to new ways to investigate individual tumors, with the aim of developing more effective cellular targeted therapies.
Journal ArticleDOI
Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder
Yaoting Gui,Guangwu Guo,Yi Huang,Xueda Hu,Aifa Tang,Aifa Tang,Shengjie Gao,Renhua Wu,Chao Chen,Xianxin Li,Liang Zhou,Minghui He,Zesong Li,Zesong Li,Xiaojuan Sun,Wenlong Jia,Jinnong Chen,Shangming Yang,Fangjian Zhou,Xiaokun Zhao,Shengqing Wan,Rui Ye,Chaozhao Liang,Zhisheng Liu,Peide Huang,Chunxiao Liu,Hui Jiang,Yong Wang,Hancheng Zheng,Liang Sun,Xingwang Liu,Zhimao Jiang,Dafei Feng,Jing Chen,Song Wu,Jing Zou,Zhongfu Zhang,Ruilin Yang,Jun Zhao,Congjie Xu,Weihua Yin,Zhichen Guan,Jiongxian Ye,Hong Zhang,Jingxiang Li,Karsten Kristiansen,Michael L. Nickerson,Dan Theodorescu,Yingrui Li,Xiuqing Zhang,Songgang Li,Jian Wang,Huanming Yang,Jun Wang,Zhiming Cai,Zhiming Cai +55 more
TL;DR: The results provide an overview of the genetic basis of TCC and suggest that aberration of chromatin regulation might be a hallmark of bladder cancer.
Posted Content
SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie,Yinlong Xie,Gengxiong Wu,Jingbo Tang,Ruibang Luo,Jordan Patterson,Shanlin Liu,Weihua Huang,Guangzhu He,Shengchang Gu,Shengkang Li,Xin Zhou,Tak-Wah Lam,Yingrui Li,Xun Xu,Gane Ka-Shu Wong,Jun Wang +16 more
TL;DR: SOAPdenovo-Trans as mentioned in this paper is a de novo transcriptome assembler designed specifically for RNA-Seq that provides higher contiguity, lower redundancy, and faster execution.
Journal ArticleDOI
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Keith Bradnam,Joseph Fass,Anton Alexandrov,Paul Baranay,Michael Bechner,Inanc Birol,Sébastien Boisvert,Jarrod Chapman,Guillaume Chapuis,Guillaume Chapuis,Rayan Chikhi,Rayan Chikhi,Hamidreza Chitsaz,Wen-Chi Chou,Jacques Corbeil,Cristian Del Fabbro,Roderick R. Docking,Richard Durbin,Dent Earl,Scott J. Emrich,Pavel Fedotov,Nuno A. Fonseca,Ganeshkumar Ganapathy,Richard A. Gibbs,Sante Gnerre,Elenie Godzaridis,Steve Goldstein,Matthias Haimel,Giles Hall,David Haussler,Joseph B. Hiatt,Isaac Ho,Jason T. Howard,Martin Hunt,Shaun D. Jackman,David B. Jaffe,Erich D. Jarvis,Huaiyang Jiang,Sergey Kazakov,Paul J. Kersey,Jacob O. Kitzman,James R. Knight,Sergey Koren,Tak-Wah Lam,Dominique Lavenier,Dominique Lavenier,Dominique Lavenier,François Laviolette,Yingrui Li,Zhenyu Li,Binghang Liu,Yue Liu,Ruibang Luo,Iain MacCallum,Matthew D. MacManes,Nicolas Maillet,Nicolas Maillet,Sergey Melnikov,Delphine Naquin,Delphine Naquin,Zemin Ning,Thomas D. Otto,Benedict Paten,Octávio S. Paulo,Adam M. Phillippy,Francisco Pina-Martins,Michael Place,Dariusz Przybylski,Xiang Qin,Carson Qu,Filipe J. Ribeiro,Stephen Richards,Daniel S. Rokhsar,Daniel S. Rokhsar,J. Graham Ruby,J. Graham Ruby,Simone Scalabrin,Michael C. Schatz,David C. Schwartz,Alexey Sergushichev,Ted Sharpe,Timothy I. Shaw,Jay Shendure,Yujian Shi,Jared T. Simpson,Henry Song,Fedor Tsarev,Francesco Vezzi,Riccardo Vicedomini,Bruno Vieira,Jun Wang,Kim C. Worley,Shuangye Yin,Siu-Ming Yiu,Jianying Yuan,Guojie Zhang,Hao Zhang,Shiguo Zhou,Ian F Korf +98 more
TL;DR: The Assemblathon 2 as discussed by the authors presented a variety of sequence data to be assembled for three vertebrate species (a bird, a fish, and a snake) from 21 participating teams.