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Yingrui Li
Researcher at Beijing Institute of Genomics
Publications - 182
Citations - 90736
Yingrui Li is an academic researcher from Beijing Institute of Genomics. The author has contributed to research in topics: Genome & Exome sequencing. The author has an hindex of 100, co-authored 182 publications receiving 76181 citations. Previous affiliations of Yingrui Li include South China University of Technology & University of Southern Denmark.
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Journal ArticleDOI
Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants
Yingrui Li,Nicolas Vinckenbosch,Geng Tian,Emilia Huerta-Sanchez,Tao Jiang,Hui Jiang,Anders Albrechtsen,Gitte Andersen,Hongzhi Cao,Thorfinn Sand Korneliussen,Niels Grarup,Yiran Guo,Ines Hellman,Xin Jin,Qibin Li,Jiangtao Liu,Xiao Liu,Thomas Sparsø,Meifang Tang,Honglong Wu,Renhua Wu,Chang Yu,Hancheng Zheng,Arne Astrup,Lars Bolund,Lars Bolund,Johan Holmkvist,Torben Jørgensen,Torben Jørgensen,Karsten Kristiansen,Ole Schmitz,Ole Schmitz,Thue W. Schwartz,Xiuqing Zhang,Ruiqiang Li,Huanming Yang,Jing Wang,Torben Hansen,Oluf Pedersen,Oluf Pedersen,Rasmus Nielsen,Rasmus Nielsen,Jun Wang +42 more
TL;DR: Exome sequencing of 200 individuals from Denmark with targeted capture of 18,654 coding genes and sequence coverage of each individual exome at an average depth of 12-fold is reported, suggesting that deleterious substitutions are primarily recessive.
Journal ArticleDOI
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
Yinhua Huang,Yinhua Huang,Yingrui Li,David W. Burt,Hualan Chen,Yong Zhang,Wubin Qian,Heebal Kim,Shangquan Gan,Yiqiang Zhao,Jianwen Li,Kang Yi,Huapeng Feng,Pengyang Zhu,Bo Li,Qiuyue Liu,Susan Fairley,Katharine E. Magor,Zhenlin Du,Xiaoxiang Hu,Laurie Goodman,Hakim Tafer,Hakim Tafer,Alain Vignal,Taeheon Lee,Kyu-Won Kim,Zheya Sheng,Yang An,Steve Searle,Javier Herrero,Martien A. M. Groenen,Richard P. M. A. Crooijmans,Thomas Faraut,Qingle Cai,Robert G. Webster,Jerry R. Aldridge,Wesley C. Warren,Sebastian Bartschat,Stephanie Kehr,Manja Marz,Peter F. Stadler,Peter F. Stadler,Jacqueline Smith,Robert H. S. Kraus,Yaofeng Zhao,Liming Ren,Jing Fei,Mireille Morisson,Peter K. Kaiser,Darren K. Griffin,Man Rao,Frédérique Pitel,Jun Wang,Ning Li +53 more
TL;DR: The duck genome sequence and deep transcriptome analyses are presented and it is shown how the duck's defense mechanisms against influenza infection have been optimized through the diversification of its β-defensin and butyrophilin-like repertoires.
Journal ArticleDOI
Frequent mutations of genes encoding ubiquitin-mediated proteolysis pathway components in clear cell renal cell carcinoma
Guangwu Guo,Yaoting Gui,Shengjie Gao,Aifa Tang,Aifa Tang,Xueda Hu,Yi Huang,Yi Huang,Wenlong Jia,Zesong Li,Zesong Li,Minghui He,Liang Sun,Pengfei Song,Xiaojuan Sun,Xiaokun Zhao,Sangming Yang,Chaozhao Liang,Shengqing Wan,Fangjian Zhou,Chao Chen,Jialou Zhu,Xianxin Li,Minghan Jian,Liang Zhou,Rui Ye,Peide Huang,Jing Chen,Tao Jiang,Xiao Liu,Yong Wang,Jing Zou,Zhimao Jiang,Renhua Wu,Song Wu,Fan Fan,Zhongfu Zhang,Lin Liu,Ruilin Yang,Xingwang Liu,Haibo Wu,Weihua Yin,Xia Zhao,Yuchen Liu,Huanhuan Peng,Bing-Hua Jiang,Qingxin Feng,Cailing Li,Jun Xie,Jingxiao Lu,Karsten Kristiansen,Yingrui Li,Xiuqing Zhang,Songgang Li,Jian Wang,Huanming Yang,Zhiming Cai,Zhiming Cai,Jun Wang +58 more
TL;DR: These findings highlight the potential contribution of UMPP to ccRCC tumorigenesis through the activation of the hypoxia regulatory network and detect frequent mutations in the ubiquitin-mediated proteolysis pathway (UMPP).
Journal ArticleDOI
Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques
Guangmei Yan,Guojie Zhang,Xiaodong Fang,Yanfeng Zhang,Cai Li,Fei Ling,David Neil Cooper,Qiye Li,Yan Li,Alain J. van Gool,Hongli Du,Jiesi Chen,Ronghua Chen,Pei Zhang,Zhiyong Huang,John R. Thompson,Yuhuan Meng,Yinqi Bai,Jufang Wang,Min Zhuo,Tao Wang,Ying Huang,Liqiong Wei,Jianwen Li,Zhiwen Wang,Haofu Hu,Pengcheng Yang,Liang Le,Peter D. Stenson,Bo Li,Xiaoming Liu,Edward V. Ball,Na An,Quanfei Huang,Yong Zhang,Wei Fan,Xiuqing Zhang,Yingrui Li,Wen Wang,Michael G. Katze,Bing Su,Rasmus Nielsen,Huanming Yang,Jun Wang,Xiaoning Wang,Jing Wang +45 more
TL;DR: High-quality draft genome sequences from two macaque species, the cynomolgus/crab-eating macaque and the Chinese rhesus macaque, are presented and several putatively dysfunctional genetic differences are identified, which may explain functional differences between them previously observed in clinical studies.
Journal ArticleDOI
Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries
Meredith L. Carpenter,Jason D. Buenrostro,Cristina Valdiosera,Cristina Valdiosera,Hannes Schroeder,Morten E. Allentoft,Martin Sikora,Morten Rasmussen,Simon Gravel,Sonia Guillén,Georgi Nekhrizov,Krasimir Leshtakov,Diana Dimitrova,Nikola Theodossiev,Davide Pettener,Donata Luiselli,Karla Sandoval,Andrés Moreno-Estrada,Yingrui Li,Jun Wang,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Eske Willerslev,William J. Greenleaf,Carlos Bustamante +24 more
TL;DR: The whole-genome capture approach makes it less costly to sequence aDNA from specimens containing very low levels of endogenous DNA, enabling the analysis of larger numbers of samples, increasing resolution in population genetic analyses.