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Yingrui Li
Researcher at Beijing Institute of Genomics
Publications - 182
Citations - 90736
Yingrui Li is an academic researcher from Beijing Institute of Genomics. The author has contributed to research in topics: Genome & Exome sequencing. The author has an hindex of 100, co-authored 182 publications receiving 76181 citations. Previous affiliations of Yingrui Li include South China University of Technology & University of Southern Denmark.
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Journal ArticleDOI
Ancient human genome sequence of an extinct Palaeo-Eskimo
Morten Rasmussen,Yingrui Li,Stinus Lindgreen,Jakob Skou Pedersen,Anders Albrechtsen,Ida Moltke,Mait Metspalu,Ene Metspalu,Toomas Kivisild,Toomas Kivisild,Ramneek Gupta,Marcelo Bertalan,Kasper Nielsen,M. Thomas P. Gilbert,Yong Wang,Maanasa Raghavan,Maanasa Raghavan,Paula F. Campos,Hanne Munkholm Kamp,Andrew Wilson,Andrew Gledhill,Silvana R. Tridico,Silvana R. Tridico,Michael Bunce,Eline D. Lorenzen,Jonas Binladen,Xiaosen Guo,Jing Zhao,Xiuqing Zhang,Hao Zhang,Zhuo Li,Minfeng Chen,Ludovic Orlando,Karsten Kristiansen,Mads Bak,Niels Tommerup,Christian Bendixen,Tracey Pierre,Bjarne Grønnow,Morten Meldgaard,Claus Andreasen,S. A. Fedorova,S. A. Fedorova,Ludmila P. Osipova,Thomas Higham,Christopher Bronk Ramsey,Thomas Hansen,Finn Cilius Nielsen,Michael H. Crawford,Søren Brunak,Søren Brunak,Thomas Sicheritz-Pontén,Richard Villems,Rasmus Nielsen,Rasmus Nielsen,Anders Krogh,Jun Wang,Eske Willerslev +57 more
TL;DR: This genome sequence of an ancient human obtained from ∼4,000-year-old permafrost-preserved hair provides evidence for a migration from Siberia into the New World some 5,500 years ago, independent of that giving rise to the modern Native Americans and Inuit.
Journal ArticleDOI
Sparse whole-genome sequencing identifies two loci for major depressive disorder
Na Cai,Tim B. Bigdeli,Warren W. Kretzschmar,Yihan Li,Jieqin Liang,Li Song,Jingchu Hu,Qibin Li,Wei Jin,Zhenfei Hu,Guangbiao Wang,Linmao Wang,Puyi Qian,Yuan Liu,Tao Jiang,Yao Lu,Xiuqing Zhang,Ye Yin,Yingrui Li,Xun Xu,Jingfang Gao,Mark Reimers,Todd Webb,Brien P. Riley,Silviu Alin Bacanu,Roseann E. Peterson,Yiping Chen,Hui Zhong,Zhengrong Liu,Gang Wang,Sun Jing,Hong Sang,Guoqing Jiang,Xiaoyan Zhou,Yi Li,Wei Zhang,Xueyi Wang,Xiang Fang,Runde Pan,Guodong Miao,Qiwen Zhang,Jian Hu,Fengyu Yu,Bo Du,Wenhua Sang,Keqing Li,Guibing Chen,Min Cai,Lijun Yang,Donglin Yang,Baowei Ha,Xiaohong Hong,Hong Deng,Gongying Li,Kan Li,Yan Song,Shugui Gao,Jinbei Zhang,Zhaoyu Gan,Huaqing Meng,Jiyang Pan,Chengge Gao,Kerang Zhang,Ning Sun,Youhui Li,Qihui Niu,Yutang Zhang,Tieqiao Liu,Chunmei Hu,Zhen Zhang,L Lv,Jicheng Dong,Xiaoping Wang,Ming Tao,Xumei Wang,Jing Xia,Han Rong,Qiang He,Tiebang Liu,Guoping Huang,Qiyi Mei,Zhenming Shen,Liu Ying,Jianhua Shen,Tian Tian,Xiaojuan Liu,Wenyuan Wu,Danhua Gu,Guangyi Fu,Jianguo Shi,Yunchun Chen,Xiangchao Gan,Lanfen Liu,Lina Wang,Fuzhong Yang,Enzhao Cong,Jonathan Marchini,Huanming Yang,Jian Wang,Shenxun Shi,Shenxun Shi,Richard Mott,Qi Xu,Jun Wang,Jun Wang,Jun Wang,Kenneth S. Kendler,Jonathan Flint,Jonathan Flint +108 more
TL;DR: Using low-coverage whole-genome sequencing of 5,303 Chinese women with recurrent MDD selected to reduce phenotypic heterogeneity, and 5,337 controls screened to exclude MDD, two loci contributing to risk of MDD on chromosome 10 are identified: one near the SIRT1 gene and the other in an intron of the LHPP gene.
Journal ArticleDOI
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie,Yinlong Xie,Gengxiong Wu,Jingbo Tang,Ruibang Luo,Jordan Patterson,Shanlin Liu,Weihua Huang,Guangzhu He,Shengchang Gu,Shengkang Li,Xin Zhou,Tak-Wah Lam,Yingrui Li,Xun Xu,Gane Ka-Shu Wong,Jun Wang +16 more
TL;DR: The conclusion is that SOAPdenovo-Trans provides higher contiguity, lower redundancy and faster execution, compared with two other popular transcriptome assemblers.
Journal ArticleDOI
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Keith Bradnam,Joseph Fass,Anton Alexandrov,Paul Baranay,Michael Bechner,Inanc Birol,Sébastien Boisvert,Jarrod Chapman,Guillaume Chapuis,Guillaume Chapuis,Rayan Chikhi,Rayan Chikhi,Hamidreza Chitsaz,Wen-Chi Chou,Jacques Corbeil,Cristian Del Fabbro,T. Roderick Docking,Richard Durbin,Dent Earl,Scott J. Emrich,Pavel Fedotov,Nuno A. Fonseca,Ganeshkumar Ganapathy,Richard A. Gibbs,Sante Gnerre,Elenie Godzaridis,Steve Goldstein,Matthias Haimel,Giles Hall,David Haussler,Joseph B. Hiatt,Isaac Ho,Jason T. Howard,Martin Hunt,Shaun D. Jackman,David B. Jaffe,Erich D. Jarvis,Huaiyang Jiang,Sergey Kazakov,Paul J. Kersey,Jacob O. Kitzman,James R. Knight,Sergey Koren,Tak-Wah Lam,Dominique Lavenier,Dominique Lavenier,François Laviolette,Yingrui Li,Zhenyu Li,Binghang Liu,Yue Liu,Ruibang Luo,Iain MacCallum,Matthew D. MacManes,Nicolas Maillet,Sergey Melnikov,Bruno Vieira,Delphine Naquin,Zemin Ning,Thomas D. Otto,Benedict Paten,Octávio S. Paulo,Adam M. Phillippy,Francisco Pina-Martins,Michael Place,Dariusz Przybylski,Xiang Qin,Carson Qu,Filipe J. Ribeiro,Stephen Richards,Daniel S. Rokhsar,Daniel S. Rokhsar,J. Graham Ruby,J. Graham Ruby,Simone Scalabrin,Michael C. Schatz,David C. Schwartz,Alexey Sergushichev,Ted Sharpe,Timothy I. Shaw,Jay Shendure,Yujian Shi,Jared T. Simpson,Henry Song,Fedor Tsarev,Francesco Vezzi,Riccardo Vicedomini,Jun Wang,Kim C. Worley,Shuangye Yin,Siu-Ming Yiu,Jianying Yuan,Guojie Zhang,Hao Zhang,Shiguo Zhou,Ian F Korf +95 more
TL;DR: The Assemblathon 2 as mentioned in this paper presented a variety of sequence data to be assembled for three vertebrate species (a bird, a fish, and a snake) from 21 participating teams.
Journal ArticleDOI
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
Jizeng Jia,Shancen Zhao,Xiuying Kong,Yingrui Li,Guangyao Zhao,Weiming He,Rudi Appels,Matthias Pfeifer,Yong Tao,Xueyong Zhang,Ruilian Jing,Chi Zhang,Youzhi Ma,Lifeng Gao,Chuan Gao,Manuel Spannagl,Klaus F. X. Mayer,Dong Li,Shengkai Pan,Fengya Zheng,Qun Hu,Xianchun Xia,Jianwen Li,Qinsi Liang,Jie Chen,Thomas Wicker,Caiyun Gou,Hanhui Kuang,Genyun He,Yadan Luo,Beat Keller,Qiuju Xia,Peng Lu,Junyi Wang,Hongfeng Zou,Rongzhi Zhang,Jun-Yang Xu,Jinlong Gao,Christopher P. Middleton,Zhiwu Quan,Guangming Liu,Jian Wang,Huanming Yang,Xu Liu,Zhonghu He,Long Mao,Jun Wang,Jun Wang +47 more
TL;DR: This draft genome sequence provides insight into the environmental adaptation of bread wheat and can aid in defining the large and complicated genomes of wheat species.