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Chemistry with ADF

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TLDR
The “Activation‐strain TS interaction” (ATS) model of chemical reactivity is reviewed as a conceptual framework for understanding how activation barriers of various types of reaction mechanisms arise and how they may be controlled, for example, in organic chemistry or homogeneous catalysis.
Abstract
We present the theoretical and technical foundations of the Amsterdam Density Functional (ADF) program with a survey of the characteristics of the code (numerical integration, density fitting for the Coulomb potential, and STO basis functions). Recent developments enhance the efficiency of ADF (e.g., parallelization, near order-N scaling, QM/MM) and its functionality (e.g., NMR chemical shifts, COSMO solvent effects, ZORA relativistic method, excitation energies, frequency-dependent (hyper)polarizabilities, atomic VDD charges). In the Applications section we discuss the physical model of the electronic structure and the chemical bond, i.e., the Kohn–Sham molecular orbital (MO) theory, and illustrate the power of the Kohn–Sham MO model in conjunction with the ADF-typical fragment approach to quantitatively understand and predict chemical phenomena. We review the “Activation-strain TS interaction” (ATS) model of chemical reactivity as a conceptual framework for understanding how activation barriers of various types of (competing) reaction mechanisms arise and how they may be controlled, for example, in organic chemistry or homogeneous catalysis. Finally, we include a brief discussion of exemplary applications in the field of biochemistry (structure and bonding of DNA) and of time-dependent density functional theory (TDDFT) to indicate how this development further reinforces the ADF tools for the analysis of chemical phenomena. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 931–967, 2001

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The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals

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Quantum mechanical continuum solvation models.

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cclib: A library for package‐independent computational chemistry algorithms

TL;DR: The cclib platform as discussed by the authors is a platform for the development of package-independent computational chemistry algorithms, which can automatically detect, parse, and convert the extracted information into a standard internal representation.
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A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions.

TL;DR: The new local density functional, called M06-L, is designed to capture the main dependence of the exchange-correlation energy on local spin density, spin density gradient, and spin kinetic energy density, and it is parametrized to satisfy the uniform-electron-gas limit.
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Science and technology roadmap for graphene, related two-dimensional crystals, and hybrid systems

Andrea C. Ferrari, +68 more
- 04 Mar 2015 - 
TL;DR: An overview of the key aspects of graphene and related materials, ranging from fundamental research challenges to a variety of applications in a large number of sectors, highlighting the steps necessary to take GRMs from a state of raw potential to a point where they might revolutionize multiple industries are provided.
References
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Journal ArticleDOI

Density functional calculations of molecular g-tensors in the zero-order regular approximation for relativistic effects

TL;DR: In this article, a method for the calculation of the g-tensor of Kramers doublet open shell molecules, which uses the spinor of the unpaired electron of the paramagnetic molecule, obtained from a density functional calculation, was developed.
Journal ArticleDOI

The Carbon−Lithium Electron Pair Bond in (CH3Li)n (n = 1, 2, 4)

TL;DR: In this paper, the energy gain ΔE associated with the formation of (CH3−Li)n from n Li• and n CH3• radicals is −45.5, −132.7, and −308.6 kcal/mol, respectively.
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Calculation of NMR shielding tensors based on density functional theory and a scalar relativistic Pauli‐type Hamiltonian. The application to transition metal complexes

TL;DR: In this article, the relativistic first-principle quantum mechanical method was used to calculate the shielding tensor of nuclear magnetic resonance (NMR) spectroscopy based on a scalar relatvistic two-component Pauli-type Hamiltonian.
Journal ArticleDOI

Optimization of molecular structures by self‐consistent and nonlocal density‐functional theory

TL;DR: In this article, it was shown that nonlocal corrections to the local density approximation (LDA) improved the calculated metal-ligand bond distances considerably, and the average error was reduced to 0.05 A.
Journal ArticleDOI

GEPOL: An improved description of molecular surfaces. I. Building the spherical surface set

TL;DR: The GEPOL algorithm as mentioned in this paper computes the MS by first searching the spaces inaccessible to the solvent and consequently filling them with a new set of spheres with van der Waals radii.
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