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Chemistry with ADF

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TLDR
The “Activation‐strain TS interaction” (ATS) model of chemical reactivity is reviewed as a conceptual framework for understanding how activation barriers of various types of reaction mechanisms arise and how they may be controlled, for example, in organic chemistry or homogeneous catalysis.
Abstract
We present the theoretical and technical foundations of the Amsterdam Density Functional (ADF) program with a survey of the characteristics of the code (numerical integration, density fitting for the Coulomb potential, and STO basis functions). Recent developments enhance the efficiency of ADF (e.g., parallelization, near order-N scaling, QM/MM) and its functionality (e.g., NMR chemical shifts, COSMO solvent effects, ZORA relativistic method, excitation energies, frequency-dependent (hyper)polarizabilities, atomic VDD charges). In the Applications section we discuss the physical model of the electronic structure and the chemical bond, i.e., the Kohn–Sham molecular orbital (MO) theory, and illustrate the power of the Kohn–Sham MO model in conjunction with the ADF-typical fragment approach to quantitatively understand and predict chemical phenomena. We review the “Activation-strain TS interaction” (ATS) model of chemical reactivity as a conceptual framework for understanding how activation barriers of various types of (competing) reaction mechanisms arise and how they may be controlled, for example, in organic chemistry or homogeneous catalysis. Finally, we include a brief discussion of exemplary applications in the field of biochemistry (structure and bonding of DNA) and of time-dependent density functional theory (TDDFT) to indicate how this development further reinforces the ADF tools for the analysis of chemical phenomena. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 931–967, 2001

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Journal ArticleDOI

The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals

TL;DR: The M06-2X meta-exchange correlation function is proposed in this paper, which is parametrized including both transition metals and nonmetals, and is a high-non-locality functional with double the amount of nonlocal exchange.
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Quantum mechanical continuum solvation models.

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cclib: A library for package‐independent computational chemistry algorithms

TL;DR: The cclib platform as discussed by the authors is a platform for the development of package-independent computational chemistry algorithms, which can automatically detect, parse, and convert the extracted information into a standard internal representation.
Journal ArticleDOI

A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions.

TL;DR: The new local density functional, called M06-L, is designed to capture the main dependence of the exchange-correlation energy on local spin density, spin density gradient, and spin kinetic energy density, and it is parametrized to satisfy the uniform-electron-gas limit.
Journal ArticleDOI

Science and technology roadmap for graphene, related two-dimensional crystals, and hybrid systems

Andrea C. Ferrari, +68 more
- 04 Mar 2015 - 
TL;DR: An overview of the key aspects of graphene and related materials, ranging from fundamental research challenges to a variety of applications in a large number of sectors, highlighting the steps necessary to take GRMs from a state of raw potential to a point where they might revolutionize multiple industries are provided.
References
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BookDOI

New methods in quantum theory

TL;DR: In this paper, the authors present an extension of the Loeser-Linderberg method to the case of the hydrogen atom in the presence of a uniform electric field and a Coulomb force.
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High-Pressure Mass Spectrometric Investigations of the Potential Energy Surfaces of Gas-Phase SN2 Reactions

TL;DR: In this paper, the double minimum potential energy surface for gas-phase SN2 reactions has been investigated using high pressure mass spectrometric (HPMS) experiments, and well depths and entropy changes associated with the formation of entrance and exit channel electrostatic complexes for the chloride and bromide adducts of methyl, ethyl, isopropyl, and tert-butyl bromides have been determined from the temperature dependence of the equilibrium constants for adduct formation.
Journal ArticleDOI

Charge Transfer and Environment Effects Responsible for Characteristics of DNA Base Pairing

TL;DR: The introduction of water molecules and a sodium counterion into the theoretical model deforms the geometry of AT and GC in such a way that excellent agreement with the experimental structures is obtained.
Journal ArticleDOI

Translational Activation of the SN2 Nucleophilic Displacement Reactions Cl-+ CH3Cl (CD3Cl) → ClCH3(ClCD3) + Cl-: A Guided Ion Beam Study

TL;DR: In this article, the authors used a guided ion beam tandem mass spectrometry technique to examine promotion of the symmetric bimolecular nucleophilic substitution (SN2) reaction by translational energy.
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