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Chemistry with ADF

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TLDR
The “Activation‐strain TS interaction” (ATS) model of chemical reactivity is reviewed as a conceptual framework for understanding how activation barriers of various types of reaction mechanisms arise and how they may be controlled, for example, in organic chemistry or homogeneous catalysis.
Abstract
We present the theoretical and technical foundations of the Amsterdam Density Functional (ADF) program with a survey of the characteristics of the code (numerical integration, density fitting for the Coulomb potential, and STO basis functions). Recent developments enhance the efficiency of ADF (e.g., parallelization, near order-N scaling, QM/MM) and its functionality (e.g., NMR chemical shifts, COSMO solvent effects, ZORA relativistic method, excitation energies, frequency-dependent (hyper)polarizabilities, atomic VDD charges). In the Applications section we discuss the physical model of the electronic structure and the chemical bond, i.e., the Kohn–Sham molecular orbital (MO) theory, and illustrate the power of the Kohn–Sham MO model in conjunction with the ADF-typical fragment approach to quantitatively understand and predict chemical phenomena. We review the “Activation-strain TS interaction” (ATS) model of chemical reactivity as a conceptual framework for understanding how activation barriers of various types of (competing) reaction mechanisms arise and how they may be controlled, for example, in organic chemistry or homogeneous catalysis. Finally, we include a brief discussion of exemplary applications in the field of biochemistry (structure and bonding of DNA) and of time-dependent density functional theory (TDDFT) to indicate how this development further reinforces the ADF tools for the analysis of chemical phenomena. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 931–967, 2001

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Citations
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The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals

TL;DR: The M06-2X meta-exchange correlation function is proposed in this paper, which is parametrized including both transition metals and nonmetals, and is a high-non-locality functional with double the amount of nonlocal exchange.
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Quantum mechanical continuum solvation models.

TL;DR: This paper presents a meta-modelling procedure called "Continuum Methods within MD and MC Simulations 3072", which automates the very labor-intensive and therefore time-heavy and expensive process of integrating discrete and continuous components into a discrete-time model.
Journal ArticleDOI

cclib: A library for package‐independent computational chemistry algorithms

TL;DR: The cclib platform as discussed by the authors is a platform for the development of package-independent computational chemistry algorithms, which can automatically detect, parse, and convert the extracted information into a standard internal representation.
Journal ArticleDOI

A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions.

TL;DR: The new local density functional, called M06-L, is designed to capture the main dependence of the exchange-correlation energy on local spin density, spin density gradient, and spin kinetic energy density, and it is parametrized to satisfy the uniform-electron-gas limit.
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Science and technology roadmap for graphene, related two-dimensional crystals, and hybrid systems

Andrea C. Ferrari, +68 more
- 04 Mar 2015 - 
TL;DR: An overview of the key aspects of graphene and related materials, ranging from fundamental research challenges to a variety of applications in a large number of sectors, highlighting the steps necessary to take GRMs from a state of raw potential to a point where they might revolutionize multiple industries are provided.
References
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Journal ArticleDOI

Calculation of the G-Tensor of Electron Paramagnetic Resonance Spectroscopy Using Gauge-Including Atomic Orbitals and Density Functional Theory

TL;DR: In this paper, an implementation of the g-tensor of electron paramagnetic resonance (EPR) spectroscopy is presented, based on density functional theory (DFT) and the use of gauge-including atomic orbitals (GIAO).
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GEPOL: An improved description of molecular surfaces II. Computing the molecular area and volume

TL;DR: Pascual-Ahuir and E. Silla as mentioned in this paper used a triangular tessellation approach to select the parts of these spherical surfaces which formed the molecular surface, using a data coded generic pentakisdodecahedron.
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Achieving linear scaling in exchange-correlation density functional quadratures

TL;DR: A new set of atomic partition functions (weight scheme) for density functional quadratures that yields similar accuracy but is substantially faster than the widely used algorithm of Becke is presented.
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Application of density functional theory to infrared absorption intensity calculations on main group molecules

TL;DR: In this paper, the authors evaluated the LDA and LDA/NL schemes on the infrared vibrational frequencies and absorption intensities of H2O, NH3, H2CO, C2H4, CH3OH and oxirane and showed that the calculated frequencies are relatively insensitive to the level of density functional theory as well as to the choice of basis set.
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Ground State of the (H2O)2+ Radical Cation: DFT versus Post-Hartree−Fock Methods

TL;DR: In this paper, the authors showed that the erroneous behavior of the density functionals for exchange may lead to wrong predictions for ground-state structures of systems with a three-electron bond.
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