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Gene expression profiling of gliomas: merging genomic and histopathological classification for personalised therapy

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TLDR
A 10-year progress report on human glioma GEP is provided, with focus on development of clinical diagnostic tests to identify molecular subtypes, uniquely responsive to adjuvant therapies, which may lead to a more precise classification system that accurately reflects the cellular, genetic, and molecular basis of gliomagenesis.
Abstract
The development of DNA microarray technologies over the past decade has revolutionised translational cancer research. These technologies were originally hailed as more objective, comprehensive replacements for traditional histopathological cancer classification systems, based on microscopic morphology. Although DNA microarray-based gene expression profiling (GEP) remains unlikely in the near term to completely replace morphological classification of primary brain tumours, specifically the diffuse gliomas, GEP has confirmed that significant molecular heterogeneity exists within the various morphologically defined gliomas, particularly glioblastoma (GBM). Herein, we provide a 10-year progress report on human glioma GEP, with focus on development of clinical diagnostic tests to identify molecular subtypes, uniquely responsive to adjuvant therapies. Such progress may lead to a more precise classification system that accurately reflects the cellular, genetic, and molecular basis of gliomagenesis, a prerequisite for identifying subsets uniquely responsive to specific adjuvant therapies, and ultimately in achieving individualised clinical care of glioma patients.

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Journal ArticleDOI

Glioblastoma: Overview of Disease and Treatment.

TL;DR: Despite aggressive resection and combined modality adjuvant treatment, most GBMs recur and innovative treatments, such as TTFields, drugs to target molecular receptors, and immunotherapy, are promising new options.
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Malignant Glioma: Lessons from Genomics, Mouse Models, and Stem Cells

TL;DR: How recent sequencing studies are identifying unexpected drivers of gliomagenesis is discussed, including mutations in isocitrate dehydrogenase 1 and the NF-κB pathway, and how genome-wide analyses are reshaping the classification schemes for tumors and enhancing prognostic value of molecular markers are discussed.
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Recent advances in the molecular understanding of glioblastoma.

TL;DR: Findings and techniques of genetic, epigenetic, transcriptional, and proteomic studies of glioblastoma are summarized to provide the clinician with an up-to-date overview of current identified molecular alterations that should ultimately lead to new therapeutic targets and more individualized treatment approaches in gliOBlastoma.
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Immune microenvironment of gliomas.

TL;DR: The immunological aspects of glioma microenvironment, in particular composition and various roles of the immune cells infiltrating malignant human and experimental rodent gliomas, are reviewed.
Journal ArticleDOI

Molecular classification of gliomas based on whole genome gene expression: a systematic report of 225 samples from the Chinese Glioma Cooperative Group

TL;DR: The results reveal that 3 main subtypes stably exist in Chinese patients with glioma, and the classification scheme may reflect the clinical and genetic alterations more clearly.
References
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Journal ArticleDOI

RNA-Seq: a revolutionary tool for transcriptomics

TL;DR: The RNA-Seq approach to transcriptome profiling that uses deep-sequencing technologies provides a far more precise measurement of levels of transcripts and their isoforms than other methods.
Journal ArticleDOI

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

Roger E. McLendon, +233 more
- 23 Oct 2008 - 
TL;DR: The interim integrative analysis of DNA copy number, gene expression and DNA methylation aberrations in 206 glioblastomas reveals a link between MGMT promoter methylation and a hypermutator phenotype consequent to mismatch repair deficiency in treated gliobeasts, demonstrating that it can rapidly expand knowledge of the molecular basis of cancer.
Book

WHO classification of tumours of the central nervous system

TL;DR: The current edition of the WHO Classification of Tumours of the Central Nervous System will serve as an indispensable textbook for all of those involved in the diagnosis and management of patients with tumors of the CNS, and will make a valuable addition to libraries in pathology, radiology, oncology, and neurosurgery departments.
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