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Journal ArticleDOI

Implementing personalized cancer genomics in clinical trials

Richard M. Simon, +1 more
- 01 May 2013 - 
- Vol. 12, Iss: 5, pp 358-369
TLDR
Some of the challenges of adapting data for rare cancers or molecular subsets of certain cancers, which will require aligning the availability of investigational agents, rapid turnaround of clinical grade sequencing, molecular eligibility and reconsidering clinical trial design and end points are discussed.
Abstract
The recent surge in high-throughput sequencing of cancer genomes has supported an expanding molecular classification of cancer. These studies have identified putative predictive biomarkers signifying aberrant oncogene pathway activation and may provide a rationale for matching patients with molecularly targeted therapies in clinical trials. Here, we discuss some of the challenges of adapting these data for rare cancers or molecular subsets of certain cancers, which will require aligning the availability of investigational agents, rapid turnaround of clinical grade sequencing, molecular eligibility and reconsidering clinical trial design and end points.

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Citations
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Liquid biopsy: monitoring cancer-genetics in the blood.

TL;DR: This Review will explore how tumour-associated mutations detectable in the blood can be used in the clinic after diagnosis, including the assessment of prognosis, early detection of disease recurrence, and as surrogates for traditional biopsies with the purpose of predicting response to treatments and the development of acquired resistance.
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Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines.

TL;DR: A method for the prediction of chemotherapeutic response in patients using only before-treatment baseline tumor gene expression data, validated in three independent clinical trial datasets, and obtained predictions equally good, or better, gene signatures derived directly from clinical data.
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Current Challenges in Cancer Treatment.

TL;DR: This review highlights the current concepts and discusses some of the current challenges and future prospects in cancer therapy, and selects the most comprehensive and relevant research articles, clinical trials, translational papers, and review articles on precision oncology and immuno-oncology.
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Precision medicine for cancer with next-generation functional diagnostics

TL;DR: A future diagnostic strategy that integrates functional testing with next-generation sequencing and immunoprofiling to precisely match combination therapies to individual cancer patients is suggested.
References
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Journal ArticleDOI

RNA-Seq: a revolutionary tool for transcriptomics

TL;DR: The RNA-Seq approach to transcriptome profiling that uses deep-sequencing technologies provides a far more precise measurement of levels of transcripts and their isoforms than other methods.
Journal ArticleDOI

Use of Chemotherapy plus a Monoclonal Antibody against HER2 for Metastatic Breast Cancer That Overexpresses HER2

TL;DR: The addition of trastuzumab to chemotherapy was associated with a longer time to disease progression, a higher rate of objective response, a longer duration of response, and a lower rate of death at 1 year.
Journal ArticleDOI

Identification of the transforming EML4–ALK fusion gene in non-small-cell lung cancer

TL;DR: It is shown that a small inversion within chromosome 2p results in the formation of a fusion gene comprising portions of the echinoderm microtubule-associated protein-like 4 (EML4) gene and the anaplastic lymphoma kinase (ALK) gene in non-small-cell lung cancer (NSCLC) cells.
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