Journal ArticleDOI
The sooty moulds
Putarak Chomnunti,Putarak Chomnunti,Sinang Hongsanan,Begoña Aguirre-Hudson,Qing Tian,Derek Peršoh,Manpreet K. Dhami,Aisyah S. Alias,Jianchu Xu,Xingzhong Liu,Marc Stadler,Kevin D. Hyde,Kevin D. Hyde +12 more
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TLDR
Sooty moulds have been well-studied at the morphological level, but they are poorly represented in a natural classification based on phylogeny and their biochemical potential for obtaining novel bioactive compounds for medical application is underexplored.Abstract:
Sooty moulds are a remarkable, but poorly understood group of fungi. They coat fruits and leaves superficially with black mycelia, which reduces photosynthesis rates of host plants. Few researchers have, however, tried to quantify their economic importance. Sooty moulds have been well-studied at the morphological level, but they are poorly represented in a natural classification based on phylogeny. Representatives are presently known in Antennulariellaceae, Capnodiaceae, Chaetothyriaceae, Coccodiniaceae, Euantennariaceae, Metacapnodiaceae and Trichomeriaceae and several miscellaneous genera. However, molecular data is available for only five families. Most sooty mould colonies comprise numerous species and thus it is hard to confirm relationships between genera or sexual and asexual states. Future studies need to obtain single spore isolates of species to test their phylogenetic affinities and linkages between morphs. Next generation sequencing has shown sooty mould colonies to contain many more fungal species than expected, but it is not clear which species are dominant or active in the communities. They are more common in tropical, subtropical and warm temperate regions and thus their prevalence in temperate regions is likely to increase with global warming. Sooty moulds are rarely parasitized by fungicolous taxa and these may have biocontrol potential. They apparently grow in extreme environments and may be xerophilic. This needs testing as xerophilic taxa may be of interest for industrial applications. Sooty moulds grow on sugars and appear to out-compete typical “weed” fungi and bacteria. They may produce antibiotics for this purpose and their biochemical potential for obtaining novel bioactive compounds for medical application is underexplored.read more
Citations
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Journal ArticleDOI
Fungal Diversity Revisited: 2.2 to 3.8 Million Species
TL;DR: New evidence is examined from various sources to derive an updated estimate of global fungal diversity, concluding that the commonly cited estimate of 1.5 million species is conservative and that the actual range is properly estimated at 2.2 to 3.8 million.
Journal ArticleDOI
Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
Guo Jie Li,Kevin D. Hyde,Kevin D. Hyde,Kevin D. Hyde,Rui-Lin Zhao,Sinang Hongsanan,Sinang Hongsanan,Faten A. Abdel-Aziz,Mohamed A. Abdel-Wahab,Mohamed A. Abdel-Wahab,Pablo Alvarado,Genivaldo Alves-Silva,Joseph F. Ammirati,Hiran A. Ariyawansa,Abhishek Baghela,Ali H. Bahkali,Michael Beug,D. Jayarama Bhat,Dimitar Bojantchev,Thitiya Boonpratuang,Timur S. Bulgakov,Erio Camporesi,Marcela C. Boro,Oldriska Ceska,Dyutiparna Chakraborty,Jia-Jia Chen,K. W. Thilini Chethana,Putarak Chomnunti,Giovanni Consiglio,Bao-Kai Cui,Dong-Qin Dai,Yu Cheng Dai,Dinushani A. Daranagama,Dinushani A. Daranagama,Kanad Das,Monika C. Dayarathne,Monika C. Dayarathne,Eske De Crop,Rafael J. V. De Oliveira,Carlos Alberto Fragoso de Souza,José I. de Souza,Bryn T. M. Dentinger,Bryn T. M. Dentinger,Asha J. Dissanayake,Mingkwan Doilom,Mingkwan Doilom,E. Ricardo Drechsler-Santos,Masoomeh Ghobad-Nejhad,Sean P. Gilmore,Aristóteles Góes-Neto,Michał Gorczak,Charles H. Haitjema,Kalani Kanchana Hapuarachchi,Kalani Kanchana Hapuarachchi,Akira Hashimoto,Akira Hashimoto,Mao Qiang He,Mao Qiang He,John K. Henske,Kazuyuki Hirayama,María Josefina Iribarren,Subashini C. Jayasiri,Ruvishika S. Jayawardena,Sun Jeong Jeon,Gustavo Henrique Jerônimo,Ana L. Jesus,E. B. Gareth Jones,Ji Chuan Kang,Samantha C. Karunarathna,Samantha C. Karunarathna,Paul M. Kirk,Sirinapa Konta,Sirinapa Konta,Eric Kuhnert,Ewald Langer,Haeng Sub Lee,Hyang Burm Lee,Wen-Jing Li,Wen-Jing Li,Xinghong Li,Kare Liimatainen,Diogo Xavier Lima,Chuan Gen Lin,Chuan Gen Lin,Jian-Kui Liu,Xings Zhong Liu,Zuo Yi Liu,J. Jennifer Luangsa-ard,Robert Lücking,H. Thorsten Lumbsch,Saisamorn Lumyong,Eduardo M. Leaño,Agostina V. Marano,Misato Matsumura,Misato Matsumura,Eric H. C. McKenzie,Suchada Mongkolsamrit,Peter E. Mortimer,Thi Thuong Thuong Nguyen,Tuula Niskanen,Chada Norphanphoun,Chada Norphanphoun,Michelle A. O’Malley,Sittiporn Parnmen,Julia Pawłowska,Rekhani H. Perera,Rekhani H. Perera,Rungtiwa Phookamsak,Rungtiwa Phookamsak,Chayanard Phukhamsakda,Chayanard Phukhamsakda,Carmen L. A. Pires-Zottarelli,Olivier Raspé,Mateus Arduvino Reck,Sarah C. O. Rocha,André L. C. M. A. de Santiago,Indunil C. Senanayake,Ledo Setti,Qiu Ju Shang,Sanjay K. Singh,Esteban Benjamin Sir,Kevin V. Solomon,Jie Song,Prasert Srikitikulchai,Marc Stadler,Satinee Suetrong,Hayato Takahashi,Takumasa Takahashi,Kazuaki Tanaka,Li Ping Tang,Kasun M. Thambugala,Donnaya Thanakitpipattana,Michael K. Theodorou,Benjarong Thongbai,Tuksaporn Thummarukcharoen,Qing Tian,Qing Tian,Saowaluck Tibpromma,Saowaluck Tibpromma,Annemieke Verbeken,Alfredo Vizzini,Josef Vlasák,Kerstin Voigt,Dhanushka N. Wanasinghe,Dhanushka N. Wanasinghe,Yong Wang,Gothamie Weerakoon,Hua An Wen,Ting-Chi Wen,Nalin N. Wijayawardene,Sarunyou Wongkanoun,Marta Wrzosek,Yuan Pin Xiao,Yuan Pin Xiao,Jianchu Xu,Ji Ye Yan,Jing Yang,Shu Da Yang,Yu Hu,Jin-Feng Zhang,Jie Zhao,Li-Wei Zhou,Derek Peršoh,Alan J. L. Phillips,Sajeewa S. N. Maharachchikumbura +164 more
TL;DR: This paper is a compilation of notes on 142 fungal taxa, including five new families, 20 new genera, and 100 new species, representing a wide taxonomic and geographic range.
Journal ArticleDOI
The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts
Subashini C. Jayasiri,Kevin D. Hyde,Kevin D. Hyde,Kevin D. Hyde,Hiran A. Ariyawansa,Hiran A. Ariyawansa,Jayarama D. Bhat,Bart Buyck,Lei Cai,Yu-Cheng Dai,Kamel A. Abd-Elsalam,Damien Ertz,Iman Hidayat,Rajesh Jeewon,E. B. Gareth Jones,Ali H. Bahkali,Samantha C. Karunarathna,Samantha C. Karunarathna,Jian-Kui Liu,Jian-Kui Liu,J. Jennifer Luangsa-ard,H. Thorsten Lumbsch,Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Eric H. C. McKenzie,Jean-Marc Moncalvo,Masoomeh Ghobad-Nejhad,Henrik R. Nilsson,Ka-Lai Pang,Olinto Liparini Pereira,Alan J. L. Phillips,Olivier Raspé,Adam W. Rollins,Andrea Irene Romero,Javier Etayo,Faruk Selçuk,Steven L. Stephenson,Satinee Suetrong,Joanne E. Taylor,Clement K. M. Tsui,Alfredo Vizzini,Mohamed A. Abdel-Wahab,Ting-Chi Wen,Saranyaphat Boonmee,Dong-Qin Dai,Dong-Qin Dai,Dinushani A. Daranagama,Dinushani A. Daranagama,Asha J. Dissanayake,Anusha H. Ekanayaka,Sally C. Fryar,Sinang Hongsanan,Ruvishika S. Jayawardena,Wen-Jing Li,Wen-Jing Li,Rekhani H. Perera,Rungtiwa Phookamsak,Nimali I. de Silva,Kasun M. Thambugala,Kasun M. Thambugala,Qing Tian,Qing Tian,Nalin N. Wijayawardene,Nalin N. Wijayawardene,Rui-Lin Zhao,Qi Zhao,Ji-Chuan Kang,Itthayakorn Promputtha +67 more
TL;DR: The present paper introduces the FoF database to the scientific community and briefly reviews some of the problems associated with classification and identification of the main fungal groups.
Journal ArticleDOI
Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species
Jian-Kui Liu,Kevin D. Hyde,Kevin D. Hyde,E. B. Gareth Jones,Hiran A. Ariyawansa,Hiran A. Ariyawansa,Darbhe J. Bhat,Saranyaphat Boonmee,Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Eric H. C. McKenzie,Rungtiwa Phookamsak,Rungtiwa Phookamsak,Chayanard Phukhamsakda,Chayanard Phukhamsakda,Belle Damodara Shenoy,Mohamed A. Abdel-Wahab,Mohamed A. Abdel-Wahab,Bart Buyck,Jie Chen,K. W. Thilini Chethana,Chonticha Singtripop,Chonticha Singtripop,Dong-Qin Dai,Dong-Qin Dai,Yu Cheng Dai,Dinushani A. Daranagama,Dinushani A. Daranagama,Asha J. Dissanayake,Mingkwan Doilom,Mingkwan Doilom,Melvina J. D’souza,Melvina J. D’souza,Xinlei Fan,Ishani D. Goonasekara,Kazuyuki Hirayama,Sinang Hongsanan,Sinang Hongsanan,Subashini C. Jayasiri,Ruvishika S. Jayawardena,Ruvishika S. Jayawardena,Samantha C. Karunarathna,Samantha C. Karunarathna,Wen-Jing Li,Wen-Jing Li,Ausana Mapook,Ausana Mapook,Chada Norphanphoun,Ka-Lai Pang,Rekhani H. Perera,Rekhani H. Perera,Derek Peršoh,Umpava Pinruan,Indunil C. Senanayake,Indunil C. Senanayake,Sayanh Somrithipol,Satinee Suetrong,Kazuaki Tanaka,Kasun M. Thambugala,Kasun M. Thambugala,Qing Tian,Qing Tian,Saowaluck Tibpromma,Danushka Udayanga,Danushka Udayanga,Nalin N. Wijayawardene,Nalin N. Wijayawardene,Nalin N. Wijayawardene,Dhanuska Wanasinghe,Dhanuska Wanasinghe,Komsit Wisitrassameewong,Xiang Yu Zeng,Faten A. Abdel-Aziz,Slavomír Adamčík,Ali H. Bahkali,Nattawut Boonyuen,Timur S. Bulgakov,Philippe Callac,Putarak Chomnunti,Putarak Chomnunti,Katrin Greiner,Akira Hashimoto,Akira Hashimoto,Valérie Hofstetter,Ji Chuan Kang,David P. Lewis,Xinghong Li,Xingzhong Liu,Zuo Yi Liu,Misato Matsumura,Peter E. Mortimer,Gerhard Rambold,Emile Randrianjohany,Genki Sato,Veera Sri-indrasutdhi,Cheng Ming Tian,Annemieke Verbeken,Wolfgang von Brackel,Yong Wang,Ting-Chi Wen,Jianchu Xu,Ji Ye Yan,Rui-Lin Zhao,Erio Camporesi +103 more
TL;DR: This paper is a compilation of notes on 110 fungal taxa, including one new family, 10 new genera, and 76 new species, representing a wide taxonomic and geographic range.
Journal ArticleDOI
Notes for genera: Ascomycota
Nalin N. Wijayawardene,Kevin D. Hyde,Kunhiraman C. Rajeshkumar,David L. Hawksworth,Hugo Madrid,Paul M. Kirk,Uwe Braun,Rajshree V. Singh,Pedro W. Crous,Martin Kukwa,Robert Lücking,Cletus P. Kurtzman,Andrey Yurkov,Danny Haelewaters,André Aptroot,H. Thorsten Lumbsch,Einar Timdal,Damien Ertz,Javier Etayo,Alan J. L. Phillips,Johannes Z. Groenewald,Moslem Papizadeh,Laura Selbmann,Monika C. Dayarathne,Gothamie Weerakoon,E. B. Gareth Jones,Satinee Suetrong,Qing Tian,Rafael F. Castañeda-Ruiz,Ali H. Bahkali,Ka-Lai Pang,Kazuaki Tanaka,Dong-Qin Dai,Jariya Sakayaroj,Martina Hujslová,Lorenzo Lombard,Belle Damodara Shenoy,Ave Suija,Sajeewa S. N. Maharachchikumbura,Kasun M. Thambugala,Dhanushka N. Wanasinghe,Bharati O. Sharma,Subhash Gaikwad,Gargee Pandit,Laura Zucconi,Silvano Onofri,Eleonora Egidi,Huzefa A. Raja,Rampai Kodsueb,Marcela Eugenia da Silva Cáceres,Sergio Pérez-Ortega,Patrícia Oliveira Fiuza,Josiane Santana Monteiro,Larissa N. Vasilyeva,Roger G. Shivas,María Prieto,Mats Wedin,Ibai Olariaga,A. A. Lateef,Yamini Agrawal,Seyed Abolhassan Shahzadeh Fazeli,Mohammad Ali Amoozegar,Guo Zhu Zhao,Walter P. Pfliegler,Gunjan Sharma,Magdalena Oset,Mohamed A. Abdel-Wahab,Susumu Takamatsu,K. Bensch,Nimali I. de Silva,André De Kesel,Anuruddha Karunarathna,Saranyaphat Boonmee,Donald H. Pfister,Yong-Zhong Lu,Zong-Long Luo,Nattawut Boonyuen,Dinushani A. Daranagama,Indunil C. Senanayake,Subashini C. Jayasiri,Milan C. Samarakoon,Xiang-Yu Zeng,Mingkwan Doilom,Luis Quijada,Sillma Rampadarath,Gabriela Heredia,Asha J. Dissanayake,Ruvishika S. Jayawardana,Rekhani H. Perera,Li Zhou Tang,Chayanard Phukhamsakda,Margarita Hernández-Restrepo,Xiao-Ya Ma,Saowaluck Tibpromma,Luís Fernando Pascholati Gusmão,Darshani Weerahewa,Samantha C. Karunarathna +96 more
TL;DR: This work is intended to provide the foundation for updating the ascomycete component of the “Without prejudice list of generic names of Fungi” published in 2013, which will be developed into a list of protected generic names.
References
More filters
Journal ArticleDOI
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
TL;DR: ClUSTAL X is a new windows interface for the widely-used progressive multiple sequence alignment program CLUSTAL W, providing an integrated system for performing multiple sequence and profile alignments and analysing the results.
Journal ArticleDOI
Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/ nt
Journal ArticleDOI
MRBAYES: Bayesian inference of phylogenetic trees
TL;DR: The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo, and an executable is available at http://brahms.rochester.edu/software.html.
Journal ArticleDOI
A Rapid Bootstrap Algorithm for the RAxML Web Servers
TL;DR: This work developed, implemented, and thoroughly tested rapid bootstrap heuristics in RAxML (Randomized Axelerated Maximum Likelihood) that are more than an order of magnitude faster than current algorithms and can contribute to resolving the computational bottleneck and improve current methodology in phylogenetic analyses.
Journal ArticleDOI
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
Conrad L. Schoch,Keith A. Seifert,Sabine M. Huhndorf,Vincent Robert,John L. Spouge,C. André Lévesque,Wen Chen,Elena Bolchacova,Kerstin Voigt,Pedro W. Crous,Andrew N. Miller,Michael J. Wingfield,M. Catherine Aime,Kwang Deuk An,Feng-Yan Bai,Robert W. Barreto,Dominik Begerow,Marie Josée Bergeron,Meredith Blackwell,Teun Boekhout,Teun Boekhout,Mesfin Bogale,Nattawut Boonyuen,Ana Rosa Burgaz,Bart Buyck,Lei Cai,Qing Cai,Gianluigi Cardinali,Priscila Chaverri,Brian J. Coppins,Ana Crespo,Paloma Cubas,Craig Cummings,Ulrike Damm,Z. Wilhelm de Beer,G. Sybren de Hoog,Ruth Del-Prado,Bryn T. M. Dentinger,Bryn T. M. Dentinger,Javier Diéguez-Uribeondo,Pradeep K. Divakar,Brian Douglas,Margarita Dueñas,Tuan A. Duong,Ursula Eberhardt,Joan E. Edwards,Mostafa S. Elshahed,Katerina Fliegerova,Manohar R. Furtado,Miguel A. García,Zai-Wei Ge,Gareth W. Griffith,K. Griffiths,Johannes Z. Groenewald,Marizeth Groenewald,Martin Grube,Marieka Gryzenhout,Liang-Dong Guo,Ferry Hagen,Sarah Hambleton,Richard C. Hamelin,Karen Hansen,Paul Harrold,Gregory Heller,Cesar S. Herrera,Kazuyuki Hirayama,Yuuri Hirooka,Hsiao Man Ho,Kerstin Hoffmann,Valérie Hofstetter,Filip Högnabba,Peter M. Hollingsworth,Seung-Beom Hong,Kentaro Hosaka,Jos Houbraken,Karen W. Hughes,Seppo Huhtinen,Kevin D. Hyde,Kevin D. Hyde,Timothy Y. James,Eric M. Johnson,Joan E. Johnson,Peter R. Johnston,E. B. Gareth Jones,Laura J. Kelly,Laura J. Kelly,Paul M. Kirk,Dániel G. Knapp,Urmas Kõljalg,Gábor M. Kovács,Cletus P. Kurtzman,Sara Landvik,Steven D. Leavitt,Audra S. Liggenstoffer,Kare Liimatainen,Lorenzo Lombard,J. Jennifer Luangsa-ard,H. Thorsten Lumbsch,Harinad Maganti,Sajeewa S. N. Maharachchikumbura,María P. Martín,Tom W. May,Alistair R. McTaggart,Andrew S. Methven,Wiel Meyer,Jean-Marc Moncalvo,Suchada Mongkolsamrit,László Nagy,R. Henrik Nilsson,Tuula Niskanen,Ildikó Nyilasi,Gen Okada,Izumi Okane,Ibai Olariaga,Jürgen Otte,Tamás Papp,Duckchul Park,Tamás Petkovits,Raquel Pino-Bodas,W. Quaedvlieg,Huzefa A. Raja,Dirk Redecker,Tara L. Rintoul,Constantino Ruibal,Jullie M. Sarmiento-Ramírez,Imke Schmitt,Imke Schmitt,Arthur Schüßler,Carol A. Shearer,Kozue Sotome,Franck O.P. Stefani,Soili Stenroos,B. Stielow,Herbert Stockinger,Satinee Suetrong,Sung-Oui Suh,Gi-Ho Sung,Motofumi Suzuki,Kazuaki Tanaka,Leho Tedersoo,M. Teresa Telleria,Eric D. Tretter,Wendy A. Untereiner,Hector Urbina,Csaba Vágvölgyi,Agathe Vialle,Thuy Duong Vu,Grit Walther,Qi Ming Wang,Yan Wang,Bevan S. Weir,Michael Weiß,Merlin M. White,Jianping Xu,Rebecca Yahr,Zhu L. Yang,Andrey Yurkov,Juan Carlos Zamora,Ning Zhang,Wen Ying Zhuang,David Schindel +160 more
TL;DR: Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation.
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