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Journal ArticleDOI

The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs.

TLDR
The Tol2kit greatly facilitates zebrafish transgenesis, simplifies the sharing of clones, and enables large‐scale projects testing the functions of libraries of regulatory or coding sequences.
Abstract
Transgenesis is an important tool for assessing gene function. In zebrafish, transgenesis has suffered from three problems: the labor of building complex expression constructs using conventional subcloning; low transgenesis efficiency, leading to mosaicism in transient transgenics and infrequent germline incorporation; and difficulty in identifying germline integrations unless using a fluorescent marker transgene. The Tol2kit system uses site-specific recombination-based cloning (multisite Gateway technology) to allow quick, modular assembly of [promoter]-[coding sequence]-[3' tag] constructs in a Tol2 transposon backbone. It includes a destination vector with a cmlc2:EGFP (enhanced green fluorescent protein) transgenesis marker and a variety of widely useful entry clones, including hsp70 and beta-actin promoters; cytoplasmic, nuclear, and membrane-localized fluorescent proteins; and internal ribosome entry sequence-driven EGFP cassettes for bicistronic expression. The Tol2kit greatly facilitates zebrafish transgenesis, simplifies the sharing of clones, and enables large-scale projects testing the functions of libraries of regulatory or coding sequences.

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Citations
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Journal ArticleDOI

pTransgenesis: a cross-species, modular transgenesis resource

TL;DR: The pTransgenesis resource fosters a cross-model standardization of commonly used transgenesis elements, streamlines DNA construct creation and facilitates collaboration between researchers working on different model organisms.
Journal ArticleDOI

Transposons As Tools for Functional Genomics in Vertebrate Models.

TL;DR: A battery of mutagenic cassettes that can be applied in conjunction with transposon vectors to mutagenize genes, and highlight versatile experimental strategies for the generation of engineered chromosomes for loss-of-function as well as gain- of-function mutagenesis for functional gene annotation in vertebrate models, including zebrafish, mice, and rats are described.
Journal ArticleDOI

Targeted transgene integration overcomes variability of position effects in zebrafish

TL;DR: The results demonstrate the power of the PhiC31-based transgene integration for the annotation and fine analysis of transcriptional regulatory elements and it promises to be a generally desirable tool for a range of applications, which rely on highly reproducible patterns of transgenes activity in zebrafish.
Journal ArticleDOI

Dynamics of in vivo ASC speck formation.

TL;DR: A live ASC reporter is generated through CRISPR/Cas9 tagging of the endogenous gene in zebrafish and sees strong ASC expression in the skin and other epithelia that act as barriers to insult.
Journal ArticleDOI

An optogenetic toolbox for unbiased discovery of functionally connected cells in neural circuits

TL;DR: A new genetic toolbox, ‘Optobow’, is presented, which enables simultaneous optogenetic activation of single neurons in zebrafish and measuring the activity of downstream neurons in the network, which should be useful for identification and manipulation of networks of interconnected neurons, even in dense neural tissues.
References
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Journal ArticleDOI

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TL;DR: A series of stages for development of the embryo of the zebrafish, Danio (Brachydanio) rerio is described, providing for flexibility and continued evolution of the staging series as the authors learn more about development in this species.
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Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein.

TL;DR: The latest red version matures more completely, is more tolerant of N-terminal fusions and is over tenfold more photostable than mRFP1, and three monomers with distinguishable hues from yellow-orange to red-orange have higher quantum efficiencies.
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An Hsp70-like protein in the ER: identity with the 78 kd glucose-regulated protein and immunoglobulin heavy chain binding protein.

TL;DR: A cDNA clone is characterized that encodes a protein related to the 70 kd heat shock protein, but is expressed in normal rat liver, and it is identical with two previously described proteins: GRP78, whose synthesis is induced by glucose starvation, and BiP, which is found bound to immunoglobulin heavy chains in pre-B cells.
Journal ArticleDOI

GAL4-VP16 is an unusually potent transcriptional activator

TL;DR: It is shown that the hybrid protein (GAL4-VP16) activates transcription unusually efficiently in mammalian cells when bound close to, or at large distances from the gene, and suggested that the activating region of VP16 may be near-maximally potent.
Journal ArticleDOI

DNA Cloning Using In Vitro Site-Specific Recombination

TL;DR: A method called recombinational cloning is described that uses in vitro site-specific recombination to accomplish the directional cloning of PCR products and the subsequent automatic subcloning of the DNA segment into new vector backbones at high efficiency.
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