A
Amit Kumar
Researcher at Duke University
Publications - 44
Citations - 1743
Amit Kumar is an academic researcher from Duke University. The author has contributed to research in topics: Antibody & Automatic test pattern generation. The author has an hindex of 14, co-authored 43 publications receiving 1530 citations. Previous affiliations of Amit Kumar include Synopsys & University of Iowa.
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Journal ArticleDOI
Phenotypic properties of transmitted founder HIV-1
Nicholas F. Parrish,Feng Gao,Hui Li,Elena E. Giorgi,Hannah J. Barbian,Erica H. Parrish,Lara Zajic,Shilpa S. Iyer,Julie M. Decker,Amit Kumar,Bhavna Hora,Anna Berg,Fangping Cai,Jennifer Hopper,Thomas N. Denny,Haitao Ding,Christina Ochsenbauer,John C. Kappes,Rachel P. Galimidi,Anthony P. West,Pamela J. Bjorkman,Craig B. Wilen,Robert W. Doms,Robert W. Doms,Meagan O’Brien,Nina Bhardwaj,Persephone Borrow,Barton F. Haynes,Mark Muldoon,James Theiler,Bette T. Korber,George M. Shaw,Beatrice H. Hahn +32 more
TL;DR: TF viruses are enriched for higher Env content, enhanced cell-free infectivity, improved dendritic cell interaction, and relative IFN-α resistance, which should be considered in the development and testing of AIDS vaccines.
Journal ArticleDOI
Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody
Mattia Bonsignori,Tongqing Zhou,Zizhang Sheng,Lei Chen,Feng Gao,M. Gordon Joyce,Gabriel Ozorowski,Gwo-Yu Chuang,Chaim A. Schramm,Kevin Wiehe,S. Munir Alam,Todd Bradley,Morgan A. Gladden,Kwan-Ki Hwang,Sheelah Iyengar,Amit Kumar,Xiaozhi Lu,Kan Luo,Michael C. Mangiapani,Robert Parks,Hongshuo Song,Priyamvada Acharya,Robert T. Bailer,Allen Cao,Aliaksandr Druz,Ivelin S. Georgiev,Young Do Kwon,Mark K. Louder,Baoshan Zhang,Anqi Zheng,Brenna J. Hill,Rui Kong,Cinque Soto,James C. Mullikin,Daniel C. Douek,David C. Montefiori,M. A. Moody,George M. Shaw,Beatrice H. Hahn,Garnett Kelsoe,Peter T. Hraber,Bette T. Korber,Scott D. Boyd,Andrew Fire,Thomas B. Kepler,Lawrence Shapiro,Lawrence Shapiro,Andrew B. Ward,John R. Mascola,Hua-Xin Liao,Peter D. Kwong,Barton F. Haynes +51 more
TL;DR: The development of a VH1-46-derived antibody lineage that matured to neutralize 90% of HIV-1 isolates is defined with longitudinal sampling from time-of-infection to suggest a vaccination strategy for inducing both lineages.
Journal ArticleDOI
Cooperation of B Cell Lineages in Induction of HIV-1-Broadly Neutralizing Antibodies
Feng Gao,Mattia Bonsignori,Hua-Xin Liao,Amit Kumar,Shi Mao Xia,Xiaozhi Lu,Fangping Cai,Kwan Ki Hwang,Hongshuo Song,Tongqing Zhou,Rebecca M. Lynch,S. Munir Alam,M. Anthony Moody,Guido Ferrari,Mark Berrong,Garnett Kelsoe,George M. Shaw,Beatrice H. Hahn,David C. Montefiori,Gift Kamanga,Myron S. Cohen,Peter T. Hraber,Peter D. Kwong,Bette T. Korber,John R. Mascola,Thomas B. Kepler,Barton F. Haynes +26 more
TL;DR: The B cell response in a bnAb-producing individual is studied and two B cell lineages cooperated to induce the development of bnAbs, a virus-neutralizing antibody lineage that targeted an envelope region (loop D) and selected virus escape mutants that resulted in both enhanced B cell lineage envelope binding and escape mutant neutralization-traits associated with increased B cell antigen drive.
Journal ArticleDOI
Transmitted/founder and chronic subtype C HIV-1 use CD4 and CCR5 receptors with equal efficiency and are not inhibited by blocking the integrin α4β7
Nicholas F. Parrish,Craig B. Wilen,Lauren B. Banks,Shilpa S. Iyer,Jennifer M. Pfaff,Jesus F. Salazar-Gonzalez,Maria G. Salazar,Julie M. Decker,Erica H. Parrish,Anna Berg,Jennifer Hopper,Bhavna Hora,Amit Kumar,Tatenda Mahlokozera,Sally Yuan,Charl Coleman,Marion Vermeulen,Haitao Ding,Christina Ochsenbauer,John C. Tilton,Sallie R. Permar,John C. Kappes,Michael R. Betts,Michael P. Busch,Feng Gao,David C. Montefiori,Barton F. Haynes,George M. Shaw,Beatrice H. Hahn,Robert W. Doms +29 more
TL;DR: It is found that T/F and chronic control Envs were indistinguishable in the efficiency with which they used CD4 and CCR5, and saturating concentrations of anti-α4β7 antibodies failed to inhibit infection and replication of T/f as well as chronic control viruses.
Journal ArticleDOI
Human Non-neutralizing HIV-1 Envelope Monoclonal Antibodies Limit the Number of Founder Viruses during SHIV Mucosal Infection in Rhesus Macaques
Sampa Santra,Georgia D. Tomaras,Ranjit Warrier,Nathan I. Nicely,Hua-Xin Liao,Justin Pollara,Pinghuang Liu,S. Munir Alam,Ruijun Zhang,Sarah L. Cocklin,Xiaoying Shen,Ryan Duffy,Shi-Mao Xia,Robert J. Schutte,Charles W. Pemble,S. Moses Dennison,Hui Li,Andrew Chao,Kora Vidnovic,Abbey Evans,Katja Klein,Amit Kumar,James E. Robinson,Gary Landucci,Donald N. Forthal,David C. Montefiori,Jaranit Kaewkungwal,Sorachai Nitayaphan,Punnee Pitisuttithum,Supachai Rerks-Ngarm,Merlin L. Robb,Nelson L. Michael,Jerome H. Kim,Kelly A. Soderberg,Elena E. Giorgi,Lily M. Blair,Bette T. Korber,Christiane Moog,Robin J. Shattock,Norman L. Letvin,Joern E. Schmitz,M. A. Moody,Feng Gao,Guido Ferrari,George M. Shaw,Barton F. Haynes +45 more
TL;DR: For one of these mAbs, gp41 mAb 7B2, this work provides the first co-crystal structure in complex with a common cyclical loop motif demonstrated to be critical for infection by other retroviruses.