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Carl F. Schaefer
Researcher at National Institutes of Health
Publications - 34
Citations - 35133
Carl F. Schaefer is an academic researcher from National Institutes of Health. The author has contributed to research in topics: BioPAX : Biological Pathways Exchange & Gene. The author has an hindex of 25, co-authored 34 publications receiving 31134 citations.
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Journal ArticleDOI
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Robert L. Strausberg,Elise A. Feingold,Lynette H. Grouse,Jeffery G. Derge,Richard D. Klausner,Francis S. Collins,Lukas Wagner,Carolyn M. Shenmen,Gregory D. Schuler,Stephen F. Altschul,Barry R. Zeeberg,Kenneth H. Buetow,Carl F. Schaefer,Narayan K. Bhat,Ralph F. Hopkins,Heather Jordan,Troy Moore,Steve I Max,Jun Wang,Florence Hsieh,Luda Diatchenko,Kate Marusina,Andrew A Farmer,Gerald M. Rubin,Ling Hong,Mark Stapleton,M. Bento Soares,Maria de Fatima Bonaldo,Thomas L. Casavant,Todd E. Scheetz,Michael J. Brownstein,Ted B. Usdin,Shiraki Toshiyuki,Piero Carninci,Christa Prange,Sam S Raha,Naomi A Loquellano,Garrick J Peters,Rick D Abramson,Sara J Mullahy,Stephanie Bosak,Paul J. McEwan,Kevin McKernan,Joel A. Malek,Preethi H. Gunaratne,Stephen Richards,Kim C. Worley,Sarah Hale,Angela M. Garcia,Stephen W. Hulyk,Debbie K Villalon,Donna M. Muzny,Erica Sodergren,Xiuhua Lu,Richard A. Gibbs,Jessica Fahey,Erin Helton,Mark Ketteman,Anuradha Madan,Stephanie Rodrigues,Amy Sanchez,Michelle Whiting,Anup Madan,Alice C. Young,Yuriy O. Shevchenko,Gerard G. Bouffard,Robert W. Blakesley,Jeffrey W. Touchman,Eric D. Green,Mark Dickson,Alex Rodriguez,Jane Grimwood,Jeremy Schmutz,Richard M. Myers,Yaron S.N. Butterfield,Martin Krzywinski,Ursula Skalska,Duane E. Smailus,Angelique Schnerch,Jacqueline E. Schein,Steven J.M. Jones,Marco A. Marra +81 more
TL;DR: The National Institutes of Health Mammalian Gene Collection (MGC) Program is a multiinstitutional effort to identify and sequence a cDNA clone containing a complete ORF for each human and mouse gene.
Journal ArticleDOI
PID: the Pathway Interaction Database.
Carl F. Schaefer,Kira Anthony,Shiva Krupa,Jeffrey Buchoff,Matthew Day,Timo Hannay,Kenneth H. Buetow +6 more
TL;DR: The Pathway Interaction Database (PID), a freely available collection of curated and peer-reviewed pathways composed of human molecular signaling and regulatory events and key cellular processes, serves as a research tool for the cancer research community and others interested in cellular pathways.
Journal ArticleDOI
The BioPAX community standard for pathway data sharing
Emek Demir,Emek Demir,Michael P. Cary,Suzanne M. Paley,Ken Fukuda,Christian Lemer,Imre Vastrik,Guanming Wu,Peter D'Eustachio,Carl F. Schaefer,Joanne S. Luciano,Frank Schacherer,Irma Martínez-Flores,Zhenjun Hu,Verónica Jiménez-Jacinto,Geeta Joshi-Tope,Kumaran Kandasamy,Alejandra López-Fuentes,Huaiyu Mi,Elgar Pichler,Igor Rodchenkov,Andrea Splendiani,Andrea Splendiani,Sasha Tkachev,Jeremy Zucker,Gopal R. Gopinath,Harsha Rajasimha,Harsha Rajasimha,Ranjani Ramakrishnan,Imran Shah,Mustafa H Syed,Nadia Anwar,Özgün Babur,Özgün Babur,Michael L. Blinov,Erik Brauner,Dan Corwin,Sylva L. Donaldson,Frank Gibbons,Robert N. Goldberg,Peter Hornbeck,Augustin Luna,Peter Murray-Rust,Eric K. Neumann,Oliver Reubenacker,Matthias Samwald,Matthias Samwald,Martijn P. van Iersel,Sarala M. Wimalaratne,Keith Allen,Burk Braun,Michelle Whirl-Carrillo,Kei-Hoi Cheung,Kam D. Dahlquist,Andrew Finney,Marc Gillespie,Elizabeth M. Glass,Li Gong,Robin Haw,Michael Honig,Olivier Hubaut,David W. Kane,Shiva Krupa,Martina Kutmon,Julie Leonard,Debbie Marks,David Merberg,Victoria Petri,Alexander R. Pico,Dean Ravenscroft,Liya Ren,Nigam H. Shah,Margot Sunshine,Rebecca Tang,Ryan Whaley,Stan Letovksy,Kenneth H. Buetow,Andrey Rzhetsky,Vincent Schächter,Bruno S. Sobral,Ugur Dogrusoz,Shannon K. McWeeney,Mirit I. Aladjem,Ewan Birney,Julio Collado-Vides,Susumu Goto,Michael Hucka,Nicolas Le Novère,Natalia Maltsev,Akhilesh Pandey,Paul Thomas,Edgar Wingender,Peter D. Karp,Chris Sander,Gary D. Bader +94 more
TL;DR: Thousands of interactions, organized into thousands of pathways, from many organisms are available from a growing number of databases, and this large amount of pathway data in a computable form will support visualization, analysis and biological discovery.
Journal ArticleDOI
The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)
Daniela S. Gerhard,Lukas Wagner,Elise A. Feingold,Carolyn M. Shenmen,Lynette H. Grouse,Greg Schuler,Steven L. Klein,Susan Old,Rebekah S. Rasooly,Peter J. Good,Mark S. Guyer,Allison M. Peck,Jeffery G. Derge,David J. Lipman,Francis S. Collins,Wonhee Jang,Steven Sherry,Mike Feolo,Leonie Misquitta,Eduardo Lee,Kirill Rotmistrovsky,Susan F. Greenhut,Carl F. Schaefer,Kenneth H. Buetow,Tom I. Bonner,David Haussler,Jim Kent,Mark Diekhans,Terry Furey,Michael R. Brent,Christa Prange,Kirsten Schreiber,Nicole Shapiro,Narayan K. Bhat,Ralph F. Hopkins,Florence Hsie,Tom Driscoll,M. Bento Soares,Maria de Fatima Bonaldo,Thomas L. Casavant,Todd E. Scheetz,Michael J. Brownstein,Ted B. Usdin,Shiraki Toshiyuki,Piero Carninci,Yulan Piao,Dawood B. Dudekula,Minoru S.H. Ko,Koichi Kawakami,Yutaka Suzuki,Sumio Sugano,C. E. Gruber,M. R. Smith,Blake A. Simmons,Troy Moore,Richard C. Waterman,Stephen L. Johnson,Yijun Ruan,Chia-Lin Wei,Sinnakaruppan Mathavan,Preethi H. Gunaratne,Jia Qian Wu,Angela M. Garcia,Stephen W. Hulyk,Edwin Fuh,Ye Yuan,Anna Sneed,Carla Kowis,Anne Hodgson,Donna M. Muzny,John Douglas Mcpherson,Richard A. Gibbs,Jessica Fahey,Jessica Fahey,Erin Helton,Mark Ketteman,Anuradha Madan,Anuradha Madan,Stephanie Rodrigues,Stephanie Rodrigues,Amy Sanchez,Michelle Whiting,Anup Madan,Anup Madan,Alice C. Young,Keith Wetherby,Steven J. Granite,Peggy N. Kwong,Charles P. Brinkley,Russell L. Pearson,Gerard G. Bouffard,Robert W. Blakesly,Eric D. Green,Mark Dickson,Alex Rodriguez,Jane Grimwood,Jeremy Schmutz,Richard M. Myers,Yaron S.N. Butterfield,Malachi Griffith,Obi L. Griffith,Martin Krzywinski,Nancy Y. Liao,Ryan Morrin,Diana L. Palmquist,Anca Petrescu,Ursula Skalska,Duane E. Smailus,Jeff M. Stott,Angelique Schnerch,Jacqueline E. Schein,Steven J.M. Jones,Robert A. Holt,Agnes Baross,Marco A. Marra,Sandra W. Clifton,Kathryn A. Makowski,Stephanie Bosak,Joel A. Malek +118 more
TL;DR: Comparison of the sequence of the MGC clones to reference genome sequences reveals that most cDNA clones are of very high sequence quality, although it is likely that some cDNAs may carry missense variants as a consequence of experimental artifact, such as PCR, cloning, or reverse transcriptase errors.
Journal ArticleDOI
An anatomy of normal and malignant gene expression
Kathy Boon,Elisson C. Osório,Susan F. Greenhut,Carl F. Schaefer,Jennifer Shoemaker,Kornelia Polyak,Patrice J. Morin,Kenneth H. Buetow,Robert L. Strausberg,Sandro J. de Souza,Gregory J. Riggins +10 more
TL;DR: An easily accessible view of nearly any gene's expression in a wide variety of malignant and normal tissues, displayed on the SAGE Anatomic Viewer.