K
Khajamohiddin Syed
Researcher at University of Zululand
Publications - 52
Citations - 3982
Khajamohiddin Syed is an academic researcher from University of Zululand. The author has contributed to research in topics: Phanerochaete & Gene. The author has an hindex of 20, co-authored 47 publications receiving 3159 citations. Previous affiliations of Khajamohiddin Syed include University of Cincinnati Academic Health Center & University of Cincinnati.
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Journal ArticleDOI
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
Dimitrios Floudas,Manfred Binder,Robert Riley,Kerrie Barry,Robert A. Blanchette,Bernard Henrissat,Ángel T. Martínez,Robert Otillar,Joseph W. Spatafora,Jagjit S. Yadav,Andrea Aerts,Isabelle Benoit,Alexander Boyd,Alexis Carlson,Alex Copeland,Pedro M. Coutinho,Ronald P. de Vries,Patricia Ferreira,Keisha Findley,Brian Foster,Jill Gaskell,Dylan Glotzer,Paweł Górecki,Joseph Heitman,Cedar N. Hesse,Chiaki Hori,Kiyohiko Igarashi,Joel A. Jurgens,Nathan M Kallen,Phil Kersten,Annegret Kohler,Ursula Kües,T. K. Arun Kumar,Alan Kuo,Kurt LaButti,Luis F. Larrondo,Erika Lindquist,Albee Y. Ling,Vincent Lombard,Susan Lucas,Taina Lundell,Rachael Martin,David J. McLaughlin,Ingo Morgenstern,Emanuelle Morin,Claude Murat,László Nagy,Matthew J Nolan,Robin A. Ohm,Aleksandrina Patyshakuliyeva,Antonis Rokas,Francisco J. Ruiz-Dueñas,Grzegorz Sabat,Asaf Salamov,Masahiro Samejima,Jeremy Schmutz,Jason C. Slot,Franz J. St John,Jan Stenlid,Hui Sun,Sheng Sun,Khajamohiddin Syed,Adrian Tsang,Ad Wiebenga,Darcy Young,Antonio G. Pisabarro,Daniel C. Eastwood,Francis Martin,Dan Cullen,Igor V. Grigoriev,David S. Hibbett +70 more
TL;DR: Comparative analyses of 31 fungal genomes suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species.
Journal ArticleDOI
Software for molecular docking: a review
TL;DR: Docking against homology-modeled targets also becomes possible for proteins whose structures are not known, and the druggability of the compounds and their specificity against a particular target can be calculated for further lead optimization processes.
Journal ArticleDOI
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
Elena Fernández-Fueyo,Francisco J. Ruiz-Dueñas,Patricia Ferreira,Dimitrios Floudas,David S. Hibbett,Paulo Canessa,Luis F. Larrondo,Timothy Y. James,Daniela Seelenfreund,Sergio Lobos,Rubén Polanco,Mario Tello,Yoichi Honda,Takahito Watanabe,Takashi Watanabe,Ryu Jae San,Christian P. Kubicek,Monika Schmoll,Jill Gaskell,Kenneth E. Hammel,Franz J. St John,Amber Vanden Wymelenberg,Grzegorz Sabat,Sandra Splinter BonDurant,Khajamohiddin Syed,Jagjit S. Yadav,Harshavardhan Doddapaneni,Venkataramanan Subramanian,José Luis Lavín,José A. Oguiza,Gúmer Pérez,Antonio G. Pisabarro,Lucía Ramírez,Francisco Santoyo,Emma R. Master,Pedro M. Coutinho,Bernard Henrissat,Vincent Lombard,Jon K. Magnuson,Ursula Kües,Chiaki Hori,Kiyohiko Igarashi,Masahiro Samejima,Benjamin W. Held,Kerrie Barry,Kurt LaButti,Alla Lapidus,Erika Lindquist,Susan Lucas,Robert Riley,Asaf Salamov,Dirk Hoffmeister,Daniel Schwenk,Yitzhak Hadar,Oded Yarden,Ronald P. de Vries,Ad Wiebenga,Jan Stenlid,Daniel C. Eastwood,Igor V. Grigoriev,Randy M. Berka,Robert A. Blanchette,Phil Kersten,Ángel T. Martínez,Rafael Vicuña,Dan Cullen +65 more
TL;DR: In this paper, a comparative genome analysis of C. subvermispora and P. chrysosporium was conducted to investigate the basis for selective ligninolysis.
Journal ArticleDOI
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.
Luis M. Corrochano,Alan Kuo,Marina Marcet-Houben,Silvia Polaino,Asaf Salamov,José Manuel Villalobos-Escobedo,Jane Grimwood,M. Isabel Isabel Álvarez,Javier Avalos,Diane Bauer,Ernesto P. Benito,Isabelle Benoit,Gertraud Burger,Lola P. Camino,David Cánovas,Enrique Cerdá-Olmedo,Jan Fang Cheng,Angel Domínguez,Marek Eliáš,Arturo P. Eslava,Fabian Glaser,Gabriel Gutiérrez,Joseph Heitman,Bernard Henrissat,Bernard Henrissat,Enrique A. Iturriaga,B. Franz Franz Lang,José Luis Lavín,Soo Chan Lee,Wenjun Li,Erika Lindquist,Sergio López-García,Eva M. Luque,Ana T. Marcos,Joel Martin,Kevin McCluskey,Humberto R. Medina,Alejandro Miralles-Durán,Atsushi Miyazaki,Elisa Muñoz-Torres,José A. Oguiza,Robin A. Ohm,María Teresa Camacho Olmedo,Margarita Orejas,Lucila Ortiz-Castellanos,Antonio G. Pisabarro,Julio Rodríguez-Romero,José Ruiz-Herrera,Rosa M. Ruiz-Vázquez,Catalina Sanz,Wendy Schackwitz,Mahdi Shahriari,Ekaterina Shelest,Fatima Silva-Franco,Darren M. Soanes,Khajamohiddin Syed,Víctor G. Tagua,Nicholas J. Talbot,Michael R. Thon,Hope Tice,Ronald P. de Vries,Ad Wiebenga,Jagjit S. Yadav,Edward L. Braun,Scott E. Baker,Victoriano Garre,Jeremy Schmutz,Benjamin A. Horwitz,Santiago Torres-Martínez,Alexander Idnurm,Alexander Idnurm,Alfredo Herrera-Estrella,Toni Gabaldón,Toni Gabaldón,Igor V. Grigoriev +74 more
TL;DR: The genome duplication provided the means to improve signal transduction for enhanced perception of environmental signals and will help to understand the role of genome dynamics in the evolution of sensory perception in eukaryotes.
Journal ArticleDOI
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize
Hitoshi Suzuki,Jacqueline MacDonald,Khajamohiddin Syed,Asaf Salamov,Chiaki Hori,Andrea Aerts,Bernard Henrissat,Ad Wiebenga,Patricia A. vanKuyk,Kerrie Barry,Erika Lindquist,Kurt LaButti,Alla Lapidus,Susan Lucas,Pedro M. Coutinho,Yunchen Gong,Masahiro Samejima,Radhakrishnan Mahadevan,Mamdouh Abou-Zaid,Ronald P. de Vries,Kiyohiko Igarashi,Jagjit S. Yadav,Igor V. Grigoriev,Emma R. Master +23 more
TL;DR: The P. carnosa genome is enriched with genes that encode P450 monooxygenases that can participate in extractives degradation, and manganese peroxidases involved in lignin degradation, which could be correlated to the utilization of heartwood and sapwood preparations from both coniferous and hardwood species.