R
Roderic Guigó
Researcher at Pompeu Fabra University
Publications - 475
Citations - 121421
Roderic Guigó is an academic researcher from Pompeu Fabra University. The author has contributed to research in topics: Computer science & Gene. The author has an hindex of 108, co-authored 304 publications receiving 106914 citations. Previous affiliations of Roderic Guigó include University of Barcelona & Harvard University.
Papers
More filters
Journal ArticleDOI
Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells
TL;DR: It is shown that blocking of ribosomal elongation results in stabilization of many associated lncRNAs, suggesting that the ribosome is the default destination for the majority of cytoplasmic long noncoding RNAs and may play a role in their degradation.
Journal ArticleDOI
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
Chao Cheng,Roger P. Alexander,Rengqiang Min,Jing Leng,Kevin Y. Yip,Kevin Y. Yip,Joel Rozowsky,Koon-Kiu Yan,Xianjun Dong,Sarah Djebali,Yijun Ruan,Carrie A. Davis,Piero Carninci,Timo Lassman,Thomas R. Gingeras,Roderic Guigó,Ewan Birney,Zhiping Weng,Michael Snyder,Mark Gerstein +19 more
TL;DR: A notable difference is revealed in the prediction accuracy of expression levels of transcription start sites (TSSs) captured by different technologies and RNA extraction protocols, which implies that these features regulate transcription in a highly coordinated manner.
Journal ArticleDOI
Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases
Jialiang Yang,Tao Huang,Francesca Petralia,Quan Long,Bin Zhang,Carmen Argmann,Yong Zhao,Charles V. Mobbs,Eric E. Schadt,Jun Zhu,Zhidong Tu,Kristin G. Ardlie,David S. DeLuca,Ayellet V. Segrè,Timothy J. Sullivan,Taylor Young,Ellen Gelfand,Casandra A. Trowbridge,Julian Maller,Taru Tukiainen,Monkol Lek,Lucas D. Ward,Lucas D. Ward,Pouya Kheradpour,Pouya Kheradpour,Benjamin Iriarte,Yan Meng,Cameron D. Palmer,Wendy Winckler,Joel N. Hirschhorn,Manolis Kellis,Manolis Kellis,Daniel G. MacArthur,Gad Getz,Andrey A. Shablin,Gen Li,Yi-Hui Zhou,Andrew B. Nobel,Ivan Rusyn,Ivan Rusyn,Fred A. Wright,Tuuli Lappalainen,Pedro G. Ferreira,Pedro G. Ferreira,Halit Ongen,Halit Ongen,Manuel A. Rivas,Alexis Battle,Alexis Battle,Sara Mostafavi,Jean Monlong,Jean Monlong,Michael Sammeth,Marta Melé,Marta Melé,Ferran Reverter,Jakob Goldman,Daphne Koller,Roderic Guigó,Mark I. McCarthy,Emmanouil T. Dermitzakis,Emmanouil T. Dermitzakis,Eric R. Gamazon,Anuar Konkashbaev,Dan L. Nicolae,Nancy J. Cox,Timothée Flutre,Xiaoquan Wen,Matthew Stephens,Jonathan K. Pritchard,Jonathan K. Pritchard,Jonathan K. Pritchard,Luan Lin,Jun Liu,Amanda M. V. Brown,Bernadette Mestichelli,Denee Tidwell,Edmund Lo,Mike Salvatore,Saboor Shad,Jeffrey A. Thomas,John T. Lonsdale,Christopher Choi,Ellen Karasik,Kimberly Ramsey,Michael T. Moser,Barbara A. Foster,Bryan Gillard,John Syron,Johnelle Fleming,Harold Magazine,Rick Hasz,Gary Walters,Jason Bridge,Mark Miklos,Susan L. Sullivan,Laura Barker,Heather M. Traino,Magboeba Mosavel,Laura A. Siminoff,Laura A. Siminoff,Dana R. Valley,Daniel C. Rohrer,Scott Jewel,Philip A. Branton,Leslie H. Sobin,Liqun Qi,Pushpa Hariharan,Shenpei Wu,David Tabor,Charles Shive,Anna M. Smith,Stephen A. Buia,Anita H. Undale,Karna Robinson,Nancy Roche,Kimberly M. Valentino,Angela Britton,Robin Burges,Debra Bradbury,Kenneth W. Hambright,John Seleski,Greg E. Korzeniewski,Kenyon Erickson,Yvonne Marcus,Jorge Tejada,Mehran Taherian,Chunrong Lu,Barnaby E. Robles,Margaret J. Basile,Deborah C. Mash,Simona Volpi,Jeff Struewing,Gary F. Temple,Joy T. Boyer,Deborah Colantuoni,Roger Little,Susan E. Koester,Latarsha J. Carithers,Helen M. Moore,Ping Guan,Carolyn C. Compton,Sherilyn Sawyer,Joanne P. Demchok,Jimmie B. Vaught,Chana A. Rabiner,Nicole C. Lockhart +146 more
TL;DR: In this article, the aging gene expression signatures are very tissue specific and enrichment for some well-known aging components such as mitochondria biology is observed in many tissues, and different levels of cross-tissue synchronization of age-related gene expression changes are observed, and some essential tissues (e.g., heart and lung) show much stronger "co-aging" than other tissues based on principal component analysis.
Journal ArticleDOI
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
Anna Vlasova,Salvador Capella-Gutierrez,Martha Rendón-Anaya,Miguel Ángel Hernández-Oñate,André E. Minoche,Ionas Erb,Francisco Câmara,Pablo Prieto-Barja,André Corvelo,Walter Sanseverino,Gaston Westergaard,Juliane C. Dohm,Georgios J. Pappas,Soledad Saburido-Alvarez,Darek Kedra,Irene González,Luca Cozzuto,Jèssica Gómez-Garrido,María A. Aguilar-Morón,Nuria Andreu,O. Mario Aguilar,Jordi Garcia-Mas,Maik Zehnsdorf,Martin P. Vazquez,Alfonso Delgado-Salinas,Luis Delaye,Ernesto Lowy,Alejandro Mentaberry,Rosana Pereira Vianello-Brondani,José Luis García,Tyler Alioto,Federico Sánchez,Heinz Himmelbauer,Marta Santalla,Cedric Notredame,Toni Gabaldón,Toni Gabaldón,Alfredo Herrera-Estrella,Roderic Guigó +38 more
TL;DR: The genome and transcriptome data generated for a Mesoamerican genotype represent a counterpart to the genomic resources already available for the Andean gene pool, and will allow the genetic dissection of the characters involved in the domestication and adaptation of the crop, and their further implementation in breeding strategies.
Journal ArticleDOI
Structured RNAs in the ENCODE selected regions of the human genome
Stefan Washietl,Jakob Skou Pedersen,Jan O. Korbel,Claudia Stocsits,Andreas Gruber,Jörg Hackermüller,Jana Hertel,Manja Lindemeyer,Kristin Reiche,Andrea Tanzer,Catherine Ucla,Carine Wyss,Stylianos E. Antonarakis,Julien Lagarde,Jorg Drenkow,Philipp Kapranov,Thomas R. Gingeras,Roderic Guigó,Michael Snyder,Mark Gerstein,Alexandre Reymond,Ivo L. Hofacker,Peter F. Stadler +22 more
TL;DR: In this paper, the authors presented a computational study to detect functional RNA structures within the ENCODE regions of the human genome using three recently introduced programs based on either phylogenetic-stochastic context-free grammar (EvoFold) or energy directed folding (RNAz and AlifoldZ), yielding several thousand candidate structures.