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Roderic Guigó
Researcher at Pompeu Fabra University
Publications - 475
Citations - 121421
Roderic Guigó is an academic researcher from Pompeu Fabra University. The author has contributed to research in topics: Computer science & Gene. The author has an hindex of 108, co-authored 304 publications receiving 106914 citations. Previous affiliations of Roderic Guigó include University of Barcelona & Harvard University.
Papers
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Journal ArticleDOI
Multivariate Analysis and Modelling of multiple Brain endOphenotypes: Let's MAMBO!
Natalia Vilor-Tejedor,Diego Garrido-Martín,Blanca Rodriguez-fernandez,Sander Lamballais,Roderic Guigó,Juan Domingo Gispert +5 more
TL;DR: In this paper, a review of multivariate methods and strategies focused on the analysis of multiple phenotypes and genetic data is presented, and relevant aspects of multi-trait modelling in the context of neuroimaging data are discussed.
Journal ArticleDOI
FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow.
TL;DR: FA-nf as discussed by the authors integrates different annotation approaches, such as NCBI BLAST+, DIAMOND, InterProScan, and KEGG, into a pipeline implemented in Nextflow, a versatile computational workflow management engine.
Journal ArticleDOI
Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes
Federico Abascal,Reyes Acosta,Nicholas Addleman,Jessika Adrian,Veena Afzal,Bronwen Aken,Jennifer A. Akiyama,Omar M. Al Jammal,Henry Amrhein,Stacie M. Anderson,Gregory R. Andrews,Igor Antoshechkin,Kristin G. Ardlie,Joel Armstrong,Matthew Astley,Budhaditya Banerjee,Amira A. Barkal,If H. A. Barnes,Iros Barozzi,Daniel Barrell,Gemma Barson,Daniel Bates,Ulugbek K. Baymuradov,Cassandra Bazile,Michael A. Beer,Samantha Beik,M. A. Bender,Ruth Bennett,Louis Philip Benoit Bouvrette,Bradley E. Bernstein,Andrew Berry,Anand Bhaskar,Alexandra Bignell,Steven M. Blue,David M. Bodine,Carles Boix,Nathan Boley,Tyler M. Borrman,Beatrice Borsari,Alan P. Boyle,Laurel A. Brandsmeier,Alessandra Breschi,Emery H. Bresnick,Jason A. Brooks,Michael Buckley,Christopher B. Burge,Rachel Byron,Eileen W. Cahill,Lingling Cai,Lulu Cao,Mark F. Mc Carty,Rosa Castanon,Andres Castillo,Hassan Chaib,Esther T. Chan,Daniel R. Chee,Sora Chee,Hao Chen,Huaming Chen,Jiayu Chen,Songjie Chen,Surya B. Chhetri,Jyoti S. Choudhary,Jacqueline Chrast,Dongjun Chung,Declan Clarke,Neal A.L. Cody,Candice J. Coppola,Julie Coursen,Anthony D'Ippolito,Stephen George Dalton,Cassidy Danyko,R. Davidson,Jose Davila-Velderrain,Carrie A. Davis,Alden Deran,Gilberto DeSalvo,Gloria Despacio-Reyes,Colin N. Dewey,Morgan Diegel,Mark Diekhans,Vishnu Dileep,Bo Ding,Sarah Djebali,Alexander Dobin,Daniel Dominguez,Sarah Donaldson,Jorg Drenkow,Timothy R. Dreszer,Yotam Drier,Michael O. Duff,Douglas Dunn,Catharine L. Eastman,Matthew D. Edwards,Nicole C. El-Ali,Shaimae I. Elhajjajy,Keri Elkins,Andrew Emili,Charles B. Epstein,Rachel C. Evans,Iakes Ezkurdia,Kaili Fan,Nina Farrell,Elise A. Feingold,Anne-Maud Ferreira,Katherine I. Fisher-Aylor,Stephen Fitzgerald,Paul Flicek,Chuan-Sheng Foo,Kevin Fortier,Adam Frankish,Peter Freese,Shaliu Fu,Xiang-Dong Fu,Yu Fu,Yoko Fukuda-Yuzawa,Mariateresa Fulciniti,Alister P. W. Funnell,Idan Gabdank,Timur R. Galeev,Mingshi Gao,Carlos García Girón,Tyler H. Garvin,Chelsea Gelboin-Burkhart,Grigorios Georgolopoulos,Mark Gerstein,Belinda Giardine,David K. Gifford,Daniel A. Gilchrist,Shawn M. Gillespie,Thomas R. Gingeras,Peng Gong,Alvaro J. González,José M. González,Peter Good,Alon Goren,David U. Gorkin,Brenton R. Graveley,Michael Gray,Jack Greenblatt,Edward Griffiths,Mark Groudine,Fabian Grubert,Mengting Gu,Roderic Guigó,Hongbo Guo,Yu Guo,Yuchun Guo,Gamze Gursoy,Maria Gutierrez-Arcelus,Jessica Halow,Matthew P. Hardy,Manoj Hariharan,Arif Harmanci,Anne Harrington,Jennifer Harrow,Tatsunori Hashimoto,Richard Hasz,Meital Hatan,Eric Haugen,James E Hayes,Peng He,Yupeng He,Nastaran Fadaei Heidari,David Hendrickson,Elisabeth F. Heuston,Jason A. Hilton,Benjamin C. Hitz,Abigail Hochman,Cory Holgren,Lei Hou,Shuyu Hou,Yun-Hua Esther Hsiao,Shan Chun Hsu,Hui Huang,Tim Hubbard,Jack Huey,Timothy P. Hughes,Toby Hunt,Sean Ibarrientos,Robbyn Issner,Mineo Iwata,Osagie G. Izuogu,Tommi S. Jaakkola,Nader Jameel,Camden Sinclair Jansen,Lixia Jiang,Peng Jiang,Audra K. Johnson,Rory Johnson,Irwin Jungreis,Madhura Kadaba,Maya Kasowski,M.A. Kasparian,Momoe Kato,Rajinder Kaul,Trupti Kawli,M. Kay,Judith C. Keen,Sunduz Keles,Cheryl A. Keller,David R. Kelley,Pouya Kheradpour,Daniel S Kim,Anthony Kirilusha,Birgit Knoechel,Samantha Kuan,Michael J. Kulik,Sushant Kumar,Anshul Kundaje,Tanya Kutyavin,Julien Lagarde,Bryan R. Lajoie,Nicole J. Lambert,John Lazar,Ah Young Lee,Donghoon Lee,Elizabeth Lee,Jin Wook Lee,Kristen Lee,Christina S. Leslie,Shawn Levy,Bin Li,Hairi Li,Nan Li,Xiangrui Li,Yang Li,Ying Li,Yining Li,Yue Liu,Jin Lian,Max Libbrecht,Shin Lin,Yiing Lin,Dianbo Liu,Jason Liu,Peng Li,Tingting Liu,X. Shirley Liu,Yang Liu,Yaping Liu,Maria R. Long,Shaoke Lou,Jane E. Loveland,Aiping Lu,Yun Lu,Eric Lécuyer,Lijia Ma,Brandon J. Mannion,Michael Mannstadt,Deepa Manthravadi,Georgi K. Marinov,Fergal J. Martin,Eugenio Mattei,Kenneth McCue,Megan McEown,Graham McVicker,Sarah Meadows,Alexander Meissner,Eric M. Mendenhall,C. Luke Messer,Wouter Meuleman,Clifford A. Meyer,Steve Miller,Matthew G. Milton,Tejaswini Mishra,Dianna E. Moore,Helen M. Moore,Samuel H. Moore,Jennifer L. Moran,Jonathan M. Mudge,Nikhil C. Munshi,Rabi Murad,Richard M. Myers,Vivek Nandakumar,Preetha Nandi,Anil M Narasimha,Aditi K. Narayanan,Hannah Naughton,Fabio C. P. Navarro,Patrick A. Navas,Jurijs Nazarovs,Jemma Nelson,Shane Neph,Fidencio Neri,Joseph R. Nery,Amy R. Nesmith,J. Scott Newberry,Kimberly M. Newberry,Vu Ngo,R. W. Nguyen,Thai B. Nguyen,Tung Nguyen,Andrew Nishida,William Stafford Noble,Catherine S. Novak,Eva Maria Novoa,Briana M. Nunez,Charles W. O'Donnell,Sara H. Olson,Kathrina C. Onate,Ericka Otterman,Hakan Ozadam,Michael J. Pagán,Tsultrim Palden,Xinghua Pan,Yongjin Park,E. Christopher Partridge,Benedict Paten,Florencia Pauli-Behn,Michael J. Pazin,Baikang Pei,Len A. Pennacchio,Alexander R Perez,Emily Perry,Dmitri D. Pervouchine,Nishigandha N. Phalke,Quan T. Pham,Douglas H. Phanstiel,Ingrid Plajzer-Frick,Gabriel A. Pratt,Henry Pratt,Sebastian Preissl,Jonathan K. Pritchard,Yuri Pritykin,Qian Qin,Giovanni Quinones-Valdez,Ines Rabano,Ernest Radovani,Anil Raj,Nisha Rajagopal,Oren Ram,L. Ramirez,Ricardo Ramirez,Dylan M. Rausch,Soumya Raychaudhuri,Joseph Raymond,Rozita Razavi,Timothy E. Reddy,Thomas M. Reimonn,Bing Ren,Alexandre Reymond,Alex Reynolds,Suhn K. Rhie,Miguel Rivera,Brian S. Roberts,Jose Manuel Rodriguez,Russell J. Ryan,Eric Rynes,Denis Salins,Richard Sandstrom,Takayo Sasaki,Shashank Sathe,Daniel Savic,Alexandra Scavelli,Jonathan Scheiman,Christoph N. Schlaffner,Jeffery A. Schloss,Frank W. Schmitges,Lei-Hoon See,Anurag Sethi,Manu Setty,Anthony Shafer,Shuo Shan,Eilon Sharon,Quanwen Shen,Richard I. Sherwood,Minyi Shi,Sunyoung Shin,Noam Shoresh,Kyle Siebenthall,Cristina Sisu,Teri Slifer,Cricket A. Sloan,Anna M. Smith,Valentina Snetkova,Michael Snyder,Damek V. Spacek,Sharanya Srinivasan,Rohith Srivas,George Stamatoyannopoulos,John A. Stamatoyannopoulos,Rebecca Stanton,D. Steffan,Sandra Stehling-Sun,J. Seth Strattan,Amanda Su,Balaji Sundararaman,Marie-Marthe Suner,Tahin Fahmid Syed,Matt Szynkarek,Forrest Y. Tanaka,Daniel G. Tenen,Ming Chuin Teng,Jeffrey Thomas,David Toffey,Michael L. Tress,Diane Trout,Gosia Trynka,Junko Tsuji,Sean Upchurch,Oana Ursu,Barbara Uszczynska-Ratajczak,Mia C. Uziel,Alfonso Valencia,Benjamin Van Biber,A. van der Velde,Eric L. Van Nostrand,Yekaterina Vaydylevich,Jesús Vázquez,Alec Victorsen,Jost Vielmetter,Jeff Vierstra,Anna Vlasova,Christopher M. Vockley,Simona Volpi,Shinny Vong,Hao Wang,Mengchi Wang,Qin Wang,Ruth Wang,Tao Wang,Wei Wang,Xiao-feng Wang,Yanli Wang,Nathaniel Watson,Xintao Wei,Zhijie Wei,Hendrik Weisser,Sherman M. Weissman,Rene Welch,Robert E. Welikson,Zhiping Weng,Harm-Jan Westra,John W. Whitaker,Collin White,Kevin P. White,Andre Wildberg,Brian A. Williams,D. Wine,Heather Witt,Maxim Y Wolf,James Santa Barbara Wright,Rui Xiao,Xinshu Xiao,Jie Xu,Jinrui Xu,Koon-Kiu Yan,Yongqi Yan,Hongbo Yang,Xinqiong Yang,Yi-Wen Yang,Galip Gürkan Yardımcı,Brian A. Yee,Gene W. Yeo,Taylor Young,Tianxiong Yu,Feng Yue,Chris Zaleski,C. Zang,Haoyang Zeng,Weihua Zeng,Daniel R. Zerbino,Jieru Zhai,Lijun Zhan,Ye Zhan,Bohan Zhang,Jialing Zhang,Jing Zhang,Kai Zhang,Lijun Zhang,Peng Zhang,Qi Qi Zhang,Xiao-Ou Zhang,Yanxiao Zhang,Zhizhuo Zhang,Yuan Zhao,Ye Zheng,Guoqing Zhong,Xiaoyan Zhou,Yun Zhu,Jared Zimmerman,Rizi Ai,Shantao Li,Jill Moore,Michael J. Purcaro,Yin Shen,Mark Mackiewicz,Ali Mortazavi,Diane E. Dickel,Juan Carlos Rivera-Mulia,Joel Rozowsky,Axel Visel,David Gilbert,Job Dekker,John L. Rinn,Joseph R. Ecker,Manolis Kellis,Robert J. Klein,Peggy J. Farnham,J. Michael Cherry,Barbara J. Wold,Ross C. Hardison +502 more
Book ChapterDOI
Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS)
Silvia Carbonell Sala,Barbara Uszczynska-Ratajczak,Julien Lagarde,Rory Johnson,Roderic Guigó +4 more
TL;DR: Metazoan genomes produce thousands of long-noncoding RNAs (lncRNAs), of which just a small fraction have been well characterized, and an approach combining targeted RNA capture with third-generation long-read sequencing (CLS) provides accurate annotations at high-throughput rates.
Posted ContentDOI
Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization
Marco Mariotti,Didac Santesmasses,Salvador Capella-Gutierrez,Andrea Mateo,Carme Arnan,Rory Johnson,Salvatore D'Aniello,Sun Hee Yim,Vadim N. Gladyshev,Florenci Serras,Montserrat Corominas,Toni Gabaldón,Toni Gabaldón,Roderic Guigó +13 more
TL;DR: The results show that non-Sec, non-Cys SPS genes originated through a number of independent gene duplications of diverse molecular origin from an ancestral selenoprotein SPS gene, and that these genes share a common function, which most likely emerged in the ancestral metazoan gene.