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Shu Zhang
Researcher at Beijing Institute of Genomics
Publications - 7
Citations - 4596
Shu Zhang is an academic researcher from Beijing Institute of Genomics. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 5, co-authored 6 publications receiving 3908 citations.
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Journal ArticleDOI
The genome of the mesopolyploid crop species Brassica rapa
Xiaowu Wang,Hanzhong Wang,Jun Wang,Jun Wang,Jun Wang,Rifei Sun,Jian Wu,Shengyi Liu,Yinqi Bai,Jeong-Hwan Mun,Ian Bancroft,Feng Cheng,Sanwen Huang,Xixiang Li,Wei Hua,Junyi Wang,Xiyin Wang,Xiyin Wang,Michael Freeling,J. Chris Pires,Andrew H. Paterson,Boulos Chalhoub,Bo Wang,Alice Hayward,Alice Hayward,Andrew G. Sharpe,Beom-Seok Park,Bernd Weisshaar,Binghang Liu,Bo Li,Bo Liu,Chaobo Tong,Chi Song,Chris Duran,Chris Duran,Chunfang Peng,Geng Chunyu,Chushin Koh,Chuyu Lin,David Edwards,David Edwards,Desheng Mu,Di Shen,Eleni Soumpourou,Fei Li,Fiona Fraser,Gavin C. Conant,Gilles Lassalle,Graham J.W. King,Guusje Bonnema,Haibao Tang,Haiping Wang,Harry Belcram,Heling Zhou,Hideki Hirakawa,Hiroshi Abe,Hui Guo,Hui Wang,Huizhe Jin,Isobel A. P. Parkin,Jacqueline Batley,Jacqueline Batley,Jeong-Sun Kim,Jérémy Just,Jianwen Li,Jiaohui Xu,Jie Deng,Jin A Kim,Jingping Li,Jingyin Yu,Jinling Meng,Jinpeng Wang,Jiumeng Min,Julie Poulain,Katsunori Hatakeyama,Kui Wu,Li Wang,Lu Fang,Martin Trick,Matthew G. Links,Meixia Zhao,Mina Jin,Nirala Ramchiary,Nizar Drou,Paul J. Berkman,Paul J. Berkman,Qingle Cai,Quanfei Huang,Ruiqiang Li,Satoshi Tabata,Shifeng Cheng,Shu Zhang,Shujiang Zhang,Shunmou Huang,Shusei Sato,Silong Sun,Soo-Jin Kwon,Su-Ryun Choi,Tae-Ho Lee,Wei Fan,Xiang Zhao,Xu Tan,Xun Xu,Yan Wang,Yang Qiu,Ye Yin,Yingrui Li,Yongchen Du,Yongcui Liao,Yong Pyo Lim,Yoshihiro Narusaka,Yupeng Wang,Zhenyi Wang,Zhenyu Li,Zhiwen Wang,Zhiyong Xiong,Zhonghua Zhang +116 more
TL;DR: The annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage, and used Arabidopsis thaliana as an outgroup for investigating the consequences of genome triplication, such as structural and functional evolution.
Journal ArticleDOI
The oyster genome reveals stress adaptation and complexity of shell formation
Guofan Zhang,Xiaodong Fang,Ximing Guo,Li Li,Ruibang Luo,Fei Xu,Pengcheng Yang,Linlin Zhang,Xiaotong Wang,Haigang Qi,Zhiqiang Xiong,Huayong Que,Yinlong Xie,Peter W. H. Holland,Jordi Paps,Yabing Zhu,Fucun Wu,Yuanxin Chen,Jiafeng Wang,Chunfang Peng,Jie Meng,Lan Yang,Jun Liu,Bo Wen,Na Zhang,Zhiyong Huang,Qihui Zhu,Yue Feng,Andrew S. Mount,Dennis Hedgecock,Zhe Xu,Yunjie Liu,Tomislav Domazet-Lošo,Yishuai Du,Xiaoqing Sun,Shoudu Zhang,Binghang Liu,Peizhou Cheng,Xuanting Jiang,Juan Li,Dingding Fan,Wei Wang,Wenjing Fu,Tong Wang,Bo Wang,Jibiao Zhang,Zhiyu Peng,Yingxiang Li,Na Li,Jinpeng Wang,Maoshan Chen,Yan He,Fengji Tan,Xiaorui Song,Qiumei Zheng,Ronglian Huang,Hailong Yang,Du Xuedi,Li Chen,Mei Yang,Patrick M. Gaffney,Shan Wang,Longhai Luo,Zhicai She,Yao Ming,Huang Wen,Shu Zhang,Baoyu Huang,Yong Zhang,Tao Qu,Peixiang Ni,Guoying Miao,Junyi Wang,Qiang Wang,Christian E. W. Steinberg,Haiyan Wang,Ning Li,Lumin Qian,Guojie Zhang,Yingrui Li,Huanming Yang,Xiao Liu,Jian Wang,Ye Yin,Jun Wang +84 more
TL;DR: The sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy and transcriptomes of development and stress response and the proteome of the shell are reported, showing that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes.
Journal ArticleDOI
The genome of the pear (Pyrus bretschneideri Rehd.)
Jun Wu,Zhiwen Wang,Zebin Shi,Shu Zhang,Ray Ming,Shilin Zhu,M. Awais Khan,Shutian Tao,Schuyler S. Korban,Hao Wang,Nancy Jung Chen,Takeshi Nishio,Xun Xu,Lin Cong,Kaijie Qi,Xiaosan Huang,Wang Yingtao,Xiang Zhao,Juyou Wu,Cao Deng,Caiyun Gou,Weili Zhou,Hao Yin,Qin Gaihua,Yuhui Sha,Ye Tao,Hui Chen,Ya-Nan Yang,Yue Song,Dongliang Zhan,Juan Wang,Leiting Li,Meisong Dai,Chao Gu,Yuezhi Wang,Daihu Shi,Xiaowei Wang,Huping Zhang,Liang Zeng,Danman Zheng,Chun-Lei Wang,Maoshan Chen,Guangbiao Wang,Xie Lin,Valpuri Sovero,Shoufeng Sha,Wenjiang Huang,S. L. Zhang,Mingyue Zhang,Jiangmei Sun,Linlin Xu,Yuan Li,Xing Liu,Qingsong Li,Jiahui Shen,Junyi Wang,Robert E. Paull,Jeffrey L. Bennetzen,Jun Wang,Shaoling Zhang +59 more
TL;DR: In this article, a high-quality draft genome sequence of the diploid P. bretschneideri Rehd was provided for de novo assembly of a highly heterozygous genome of this size with highly repetitive DNA sequences.
Journal ArticleDOI
Convergence and divergence of bitterness biosynthesis and regulation in Cucurbitaceae.
Yuan Zhou,Yongshuo Ma,Jianguo Zeng,Lixin Duan,Xiaofeng Xue,Huaisong Wang,Tao Lin,Zhiqiang Liu,Ke-Wu Zeng,Yang Zhong,Shu Zhang,Qun Hu,Min Liu,Huimin Zhang,James Reed,Tessa Moses,Xinyan Liu,Peng Huang,Zhixing Qing,Xiubin Liu,Peng-Fei Tu,Hanhui Kuang,Zhonghua Zhang,Anne Osbourn,Dae-Kyun Ro,Yi Shang,Sanwen Huang +26 more
TL;DR: Comparison of the genomes of cucumber, melon and watermelon uncovered conserved syntenic loci encoding metabolic genes for distinct cucurbitacins and discovered a syntenic gene cluster of transcription factors that regulates the tissue-specific biosynthesis of cucurbits and may confer the loss of bitterness phenotypes associated with convergent domestication of wild cucurbits.
Journal ArticleDOI
Genetic Regulation of Ethylene Dosage for Cucumber Fruit Elongation
TL;DR: A mechanistic model that governs cucumber (Cucumis sativus) fruit elongation through fine-tuning of ethylene homeostasis is reported, revealing the mechanism by which ethylene dosage is regulated for the control of cell division in developing fruit.