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Kim M. Summers
Researcher at University of Queensland
Publications - 192
Citations - 8405
Kim M. Summers is an academic researcher from University of Queensland. The author has contributed to research in topics: Gene & Population. The author has an hindex of 37, co-authored 184 publications receiving 6896 citations. Previous affiliations of Kim M. Summers include The Roslin Institute & QIMR Berghofer Medical Research Institute.
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Journal ArticleDOI
A promoter-level mammalian expression atlas
Alistair R. R. Forrest,Hideya Kawaji,Michael Rehli,J Kenneth Baillie,Michiel J. L. de Hoon,Vanja Haberle,Vanja Haberle,Timo Lassmann,Ivan V. Kulakovskiy,Ivan V. Kulakovskiy,Marina Lizio,Masayoshi Itoh,Robin Andersson,Christopher J. Mungall,Terrence F. Meehan,Sebastian Schmeier,Sebastian Schmeier,Nicolas Bertin,Mette C. Jørgensen,Emmanuel Dimont,Erik Arner,Christian Schmidl,Christian Schmidl,Ulf Schaefer,Yulia A. Medvedeva,Yulia A. Medvedeva,Charles Plessy,Morana Vitezic,Jessica Severin,Colin A. Semple,Yuri Ishizu,Robert Young,Margherita Francescatto,Margherita Francescatto,Intikhab Alam Altschuler,Davide Albanese,Gabriel M. Altschule,Takahiro Arakawa,John A.C. Archer,Peter Arner,Magda Babina,Sarah Rennie,Piotr J. Balwierz,Anthony G Beckhouse,Swati Pradhan-Bhatt,Judith A. Blake,Antje Blumenthal,Beatrice Bodega,Alessandro Bonetti,James Briggs,James Briggs,Frank Brombacher,Frank Brombacher,A. Maxwell Burroughs,Andrea Califano,Carlo Vittorio Cannistraci,Carlo Vittorio Cannistraci,Daniel Carbajo,Yun Chen,Marco Chierici,Yari Ciani,Hans Clevers,Hans Clevers,Emiliano Dalla,Carrie A. Davis,Michael Detmar,Alexander D. Diehl,Taeko Dohi,Finn Drabløs,Albert S.B. Edge,Matthias Edinger,Karl Ekwall,Mitsuhiro Endoh,Hideki Enomoto,Michela Fagiolini,Lynsey Fairbairn,Hai Fang,Mary C. Farach-Carson,Geoffrey J. Faulkner,Alexander V. Favorov,Alexander V. Favorov,Alexander V. Favorov,Malcolm E. Fisher,Martin C. Frith,Rie Fujita,Shiro Fukuda,Cesare Furlanello,Masaaki Furuno,Jun Ichi Furusawa,Teunis B. H. Geijtenbeek,Andrew P. Gibson,Thomas R. Gingeras,Dan Goldowitz,Julian Gough,Sven Guhl,Reto Guler,Reto Guler,Stefano Gustincich,Thomas J. Ha,Masahide Hamaguchi,Mitsuko Hara,Matthias Harbers,Jayson Harshbarger,Akira Hasegawa,Yuki Hasegawa,Takehiro Hashimoto,Meenhard Herlyn,Kelly J Hitchens,Shannan J. Ho Sui,Oliver Hofmann,Ilka Hoof,Fumi Hori,Lukasz Huminiecki,Kei Iida,Tomokatsu Ikawa,Boris R. Jankovic,Hui Jia,Anagha Joshi,Giuseppe Jurman,Bogumil Kaczkowski,Chieko Kai,Kaoru Kaida,Ai Kaiho,Kazuhiro Kajiyama,Mutsumi Kanamori-Katayama,Artem S. Kasianov,Takeya Kasukawa,Shintaro Katayama,Sachi Kato,Shuji Kawaguchi,Hiroshi Kawamoto,Yuki I. Kawamura,Tsugumi Kawashima,Judith S. Kempfle,Tony J. Kenna,Juha Kere,Juha Kere,Levon M. Khachigian,Toshio Kitamura,S. Peter Klinken,Alan J. Knox,Miki Kojima,Soichi Kojima,Naoto Kondo,Haruhiko Koseki,Shigeo Koyasu,Sarah Krampitz,Atsutaka Kubosaki,Andrew T. Kwon,Jeroen F. J. Laros,Weon Ju Lee,Andreas Lennartsson,Kang Li,Berit Lilje,Leonard Lipovich,Alan Mackay-Sim,Ri Ichiroh Manabe,Jessica C. Mar,Benoit Marchand,Anthony Mathelier,Niklas Mejhert,Alison M. Meynert,Yosuke Mizuno,David A. de Lima Morais,Hiromasa Morikawa,Mitsuru Morimoto,Kazuyo Moro,Efthymios Motakis,Hozumi Motohashi,Christine L. Mummery,Mitsuyoshi Murata,Sayaka Nagao-Sato,Yutaka Nakachi,Fumio Nakahara,Toshiyuki Nakamura,Yukio Nakamura,Kenichi Nakazato,Erik van Nimwegen,Noriko Ninomiya,Hiromi Nishiyori,Shohei Noma,Tadasuke Nozaki,Soichi Ogishima,Soichi Ogishima,Naganari Ohkura,Hiroko Ohmiya,Hiroshi Ohno,Mitsuhiro Ohshima,Mariko Okada-Hatakeyama,Yasushi Okazaki,Valerio Orlando,Dmitry A. Ovchinnikov,Arnab Pain,Robert Passier,Margaret Patrikakis,Helena Persson,Silvano Piazza,James Prendergast,Owen J. L. Rackham,Jordan A. Ramilowski,Mamoon Rashid,Timothy Ravasi,Patrizia Rizzu,Marco Roncador,Sugata Roy,Morten Beck Rye,Eri Saijyo,Antti Sajantila,Akiko Saka,Shimon Sakaguchi,Mizuho Sakai,Hiroki Sato,Hironori Satoh,Suzana Savvi,Suzana Savvi,Alka Saxena,Claudio Schneider,Erik Anthony Schultes,Gundula G. Schulze-Tanzil,Anita Schwegmann,Anita Schwegmann,Thierry Sengstag,Guojun Sheng,Hisashi Shimoji,Yishai Shimoni,Jay W. Shin,Christophe Simon,Daisuke Sugiyama,Takaaki Sugiyama,Masanori Suzuki,Naoko Suzuki,Rolf Swoboda,Peter A C 't Hoen,Michihira Tagami,Naoko Takahashi Tagami,Jun Takai,Hiroshi Tanaka,Hideki Tatsukawa,Zuotian Tatum,Mark Thompson,Hiroo Toyoda,Tetsuro Toyoda,Eivind Valen,Marc van de Wetering,Linda M. van den Berg,Roberto Verardo,Dipti Vijayan,Ilya E. Vorontsov,Wyeth W. Wasserman,Shoko Watanabe,Christine A. Wells,Louise N. Winteringham,Ernst J. Wolvetang,Emily J. Wood,Yoko Yamaguchi,Masayuki Yamamoto,Misako Yoneda,Yohei Yonekura,Shigehiro Yoshida,Susan E. Zabierowski,Peter G. Zhang,Xiaobei Zhao,Silvia Zucchelli,Kim M. Summers,Harukazu Suzuki,Carsten O. Daub,Jun Kawai,Peter Heutink,Winston Hide,Tom C. Freeman,Boris Lenhard,Boris Lenhard,Lenhard Vladimir B. Bajic,Martin S. Taylor,Vsevolod J. Makeev,Vsevolod J. Makeev,Vsevolod J. Makeev,Albin Sandelin,David A. Hume,Piero Carninci,Yoshihide Hayashizaki +280 more
TL;DR: For example, the authors mapped transcription start sites (TSSs) and their usage in human and mouse primary cells, cell lines and tissues to produce a comprehensive overview of mammalian gene expression across the human body.
Journal ArticleDOI
Microglial brain region−dependent diversity and selective regional sensitivities to aging
Kathleen Grabert,Tom Michoel,Michail H. Karavolos,Sara Clohisey,J Kenneth Baillie,Mark P. Stevens,Tom C. Freeman,Kim M. Summers,Barry W. McColl +8 more
TL;DR: It is found that microglia have distinct region-dependent transcriptional identities and age in a regionally variable manner, and in the young adult brain, differences in bioenergetic and immunoregulatory pathways were the major sources of heterogeneity and suggested that cerebellar and hippocampalmicroglia exist in a more immune-vigilant state.
Journal ArticleDOI
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
Erik Arner,Carsten O. Daub,Kristoffer Vitting-Seerup,Robin Andersson,Berit Lilje,Finn Drabløs,Andreas Lennartsson,Michelle Rönnerblad,Olga Hrydziuszko,Morana Vitezic,Tom C. Freeman,Ahmad M. N. Alhendi,Peter Arner,Richard A Axton,J Kenneth Baillie,Anthony G Beckhouse,Beatrice Bodega,James Briggs,Frank Brombacher,Margaret B. Davis,Michael Detmar,Anna Ehrlund,Mitsuhiro Endoh,Afsaneh Eslami,Michela Fagiolini,Lynsey Fairbairn,Geoffrey J. Faulkner,Carmelo Ferrai,Malcolm E. Fisher,Lesley M. Forrester,Dan Goldowitz,Reto Guler,Thomas J. Ha,Mitsuko Hara,Meenhard Herlyn,Tomokatsu Ikawa,Chieko Kai,Hiroshi Kawamoto,Levon M. Khachigian,S. Peter Klinken,Soichi Kojima,Haruhiko Koseki,Sarah Klein,Niklas Mejhert,Ken Miyaguchi,Yosuke Mizuno,Mitsuru Morimoto,Kelly J. Morris,Christine L. Mummery,Yutaka Nakachi,Soichi Ogishima,Mariko Okada-Hatakeyama,Yasushi Okazaki,Valerio Orlando,Dmitry A. Ovchinnikov,Robert Passier,Margaret Patrikakis,Ana Pombo,Xian-Yang Qin,Sugata Roy,Hiroki Sato,Suzana Savvi,Alka Saxena,Anita Schwegmann,Daisuke Sugiyama,Rolf Swoboda,Hiroshi Tanaka,Andru Tomoiu,Louise N. Winteringham,Ernst J. Wolvetang,Chiyo Yanagi-Mizuochi,Misako Yoneda,Susan E. Zabierowski,Peter G. Zhang,Imad Abugessaisa,Nicolas Bertin,Alexander D. Diehl,Shiro Fukuda,Masaaki Furuno,Jayson Harshbarger,Akira Hasegawa,Fumi Hori,Sachi Ishikawa-Kato,Yuri Ishizu,Masayoshi Itoh,Tsugumi Kawashima,Miki Kojima,Naoto Kondo,Marina Lizio,Terrence F. Meehan,Christopher J. Mungall,Mitsuyoshi Murata,Hiromi Nishiyori-Sueki,Serkan Sahin,Sayaka Nagao-Sato,Jessica Severin,Michiel J. L. de Hoon,Jun Kawai,Takeya Kasukawa,Timo Lassmann,Harukazu Suzuki,Hideya Kawaji,Kim M. Summers,Christine A. Wells,David A. Hume,Alistair R. R. Forrest,Albin Sandelin,Piero Carninci,Yoshihide Hayashizaki +108 more
TL;DR: The data support a highly generalizable model in which enhancer transcription is the earliest event in successive waves of transcriptional change during cellular differentiation or activation.
Journal ArticleDOI
An integrated expression atlas of miRNAs and their promoters in human and mouse.
Derek De Rie,Imad Abugessaisa,Tanvir Alam,Erik Arner,Peter Arner,Haitham Ashoor,Gaby Åström,Magda Babina,Nicolas Bertin,A. Maxwell Burroughs,Ailsa J Carlisle,Carsten O. Daub,Michael Detmar,Ruslan Deviatiiarov,Alexandre Fort,Claudia Gebhard,Dan Goldowitz,Sven Guhl,Thomas J. Ha,Jayson Harshbarger,Akira Hasegawa,Kosuke Hashimoto,Meenhard Herlyn,Peter Heutink,Kelly J Hitchens,Chung-Chau Hon,Edward Huang,Edward Huang,Yuri Ishizu,Chieko Kai,Takeya Kasukawa,Peter S Klinken,Timo Lassmann,Charles-Henri Lecellier,Weon Ju Lee,Marina Lizio,Vsevolod J. Makeev,Vsevolod J. Makeev,Vsevolod J. Makeev,Anthony Mathelier,Yulia A. Medvedeva,Niklas Mejhert,Christopher J. Mungall,Shohei Noma,Mitsuhiro Ohshima,Mariko Okada-Hatakeyama,Helena Persson,Patrizia Rizzu,Filip Roudnicky,Pål Sætrom,Hiroki Sato,Jessica Severin,Jay W. Shin,Rolf Swoboda,Hiroshi Tarui,Hiroo Toyoda,Kristoffer Vitting-Seerup,Louise N. Winteringham,Yoko Yamaguchi,Kayoko Yasuzawa,Misako Yoneda,Noriko Yumoto,Susan Zabierowski,Peter G. Zhang,Christine A. Wells,Christine A. Wells,Kim M. Summers,Kim M. Summers,Hideya Kawaji,Albin Sandelin,Michael Rehli,Yoshihide Hayashizaki,Piero Carninci,Alistair R. R. Forrest,Michiel J. L. de Hoon +74 more
TL;DR: An integrated expression atlas of miRNAs and their promoters by deep-sequencing 492 short RNA libraries, with matching Cap Analysis Gene Expression (CAGE) data, is created, establishing a foundation for detailed analysis of miRNA expression patterns and transcriptional control regions.
Journal ArticleDOI
Abnormal Extracellular Matrix Protein Transport Associated With Increased Apoptosis of Vascular Smooth Muscle Cells in Marfan Syndrome and Bicuspid Aortic Valve Thoracic Aortic Aneurysm
Maria Nataatmadja,Malcolm J. West,Jenny West,Kim M. Summers,Philip J. Walker,Michio Nagata,Teruo Watanabe +6 more
TL;DR: The findings suggest the presence of a fundamental cellular abnormality in BAV thoracic aorta, possibly of genetic origin, and alteration in both the amount and quality of secreted proteins and an increased degree of VSMC apoptosis in MS and BAV.