T
Timothy J. Baroni
Researcher at State University of New York at Cortland
Publications - 80
Citations - 2773
Timothy J. Baroni is an academic researcher from State University of New York at Cortland. The author has contributed to research in topics: Entolomataceae & Rhodocybe. The author has an hindex of 18, co-authored 76 publications receiving 2453 citations. Previous affiliations of Timothy J. Baroni include State University of New York at Purchase & State University of New York System.
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Journal ArticleDOI
One hundred and seventeen clades of euagarics
Jean-Marc Moncalvo,Rytas Vilgalys,Scott A. Redhead,James E. Johnson,Timothy Y. James,M. Catherine Aime,Valérie Hofstetter,Sebastiaan J.W Verduin,Sebastiaan J.W Verduin,Ellen Larsson,Timothy J. Baroni,R. Greg Thorn,Stig Jacobsson,Heinz Clémençon,Orson K. Miller +14 more
TL;DR: This study provides a first broad systematic treatment of the euagarics as they have recently emerged in phylogenetic systematics and recognizes eight major groups of homobasidiomycetes that cut across traditional lines of classification, in agreement with other recent phylogenetic studies.
Journal ArticleDOI
Major clades of Agaricales: a multilocus phylogenetic overview
P. Brandon Matheny,Judd M. Curtis,Valérie Hofstetter,M. Catherine Aime,Jean-Marc Moncalvo,Zai-Wei Ge,Zhu-Liang Yang,Jason C. Slot,Joseph F. Ammirati,Timothy J. Baroni,Neale L. Bougher,Karen W. Hughes,D. Jean Lodge,Richard W. Kerrigan,Michelle T. Seidl,Duur K. Aanen,Matthew DeNitis,Graciela María Daniele,Dennis E. Desjardin,Bradley R. Kropp,Lorelei L. Norvell,Andrew D. Parker,Else C. Vellinga,Rytas Vilgalys,David S. Hibbett +24 more
TL;DR: An overview of the phylogeny of the Agaricales is presented based on a multilocus analysis of a six-gene region supermatrix, with at least 11 origins of the ectomycorrhizal habit appear to have evolved in the AgARicales.
Journal ArticleDOI
Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
P. Brandon Matheny,Zheng Wang,Manfred Binder,Judd M. Curtis,Young Woon Lim,R. Henrik Nilsson,Karen W. Hughes,Valérie Hofstetter,Joseph F. Ammirati,Conrad L. Schoch,Ewald Langer,Gitta Langer,David J. McLaughlin,Andrew W. Wilson,Tobias Guldberg Frøslev,Zai-Wei Ge,Richard W. Kerrigan,Jason C. Slot,Zhu-Liang Yang,Timothy J. Baroni,Michael Fischer,Kentaro Hosaka,Kenji Matsuura,Michelle T. Seidl,Jukka Vauras,David S. Hibbett +25 more
TL;DR: Strong boostrap support and significant posterior probabilities for the first time for the following monophyletic groups are produced, particularly for deep internodes of Basidiomycota, which have been difficult to resolve with confidence using nrDNA data alone.
Journal ArticleDOI
Preserving accuracy in GenBank
Thomas D. Bruns,Meredith Blackwell,Ivan P. Edwards,Andy F. S. Taylor,Thomas R. Horton,Ning Zhang,Urmas Kõljalg,Georgiana May,Thomas W. Kuyper,James D. Bever,Gregory S. Gilbert,John W. Taylor,Todd Z. DeSantis,Anne Pringle,James Borneman,Greg Thorn,Mary L. Berbee,Gregory M. Mueller,Gary L. Andersen,Else C. Vellinga,Sara Branco,Ian C. Anderson,Ian A. Dickie,Peter G. Avis,Sari Timonen,Rasmus Kjøller,D. J. Lodge,Richard M. Bateman,Andy Purvis,Pedro W. Crous,Christine V. Hawkes,Timothy G. Barraclough,Austin Burt,Ralf Nilsson,Karl-Henrik Larsson,Ian J. Alexander,Jean-Marc Moncalvo,Jean A. Bérubé,Joseph W. Spatafora,H. Thorsten Lumbsch,Jaime E. Blair,Sung-Oui Suh,Donald H. Pfister,Manfred Binder,Eric W.A. Boehm,Linda M. Kohn,Juan L. Mata,Paul S. Dyer,Gi-Ho Sung,Bryn T. M. Dentinger,Emory G. Simmons,Richard E. Baird,Thomas J. Volk,Brian A. Perry,Richard W. Kerrigan,Jinx Campbell,Jeewon Rajesh,Don R. Reynolds,David M. Geiser,Richard A. Humber,Natasha Hausmann,Timothy M. Szaro,Jason E. Stajich,Allen C. Gathman,Kabir G. Peay,Terry W. Henkel,Clare H. Robinson,Patricia J. Pukkila,Nhu H. Nguyen,Christopher F. Villalta,Peter G. Kennedy,Sarah E. Bergemann,M. Catherine Aime,Frank Kauff,Andrea Porras-Alfaro,Cécile Gueidan,Andreas Beck,Birgitte Andersen,Stephen M. Marek,Jo Anne Crouch,Julia Kerrigan,Jean B. Ristaino,Kathie T. Hodge,Gretchen A. Kuldau,Gary J. Samuels,Huzefa A. Raja,Hermann Voglmayr,Monique Gardes,David P. Janos,Jack D. Rogers,Paul F. Cannon,Sandra W. Woolfolk,H. C. Kistler,Michael A. Castellano,Sandra L. Maldonado-Ramírez,Paul M. Kirk,J. J. Farrar,Todd W. Osmundson,Randolph S. Currah,Vladimir Vujanovic,Weidong Chen,Richard P. Korf,Zahi K. Atallah,Ken J. Harrison,Josep Guarro,Scott T. Bates,Pierluigi Bonello,Paul D. Bridge,Wiley A. Schell,Walter Rossi,Jan Stenlid,Jens Christian Frisvad,R. M. Miller,Scott E. Baker,Heather E. Hallen,Jeffrey E. Janso,Andrew W. Wilson,Kenneth E. Conway,Louise M. Egerton-Warburton,Zheng Wang,Darin M. Eastburn,Wellcome W. Hong Ho,Scott Kroken,Marc Stadler,Gillian Turgeon,Robert W. Lichtwardt,Elwin L. Stewart,Mats Wedin,De Wei Li,Janice Y. Uchida,Ari Jumpponen,Ron J. Deckert,Henry J. Beker,Scott O. Rogers,Jianping Xu,Peter R. Johnston,R. A. Shoemaker,Miao Liu,Guilhermina Marques,Brett A. Summerell,Serge Sokolski,Ulf Thrane,Paul Widden,Johann N. Bruhn,Virginia Bianchinotti,Dorothy E. Tuthill,Timothy J. Baroni,G. L. Barron,Kentaro Hosaka,Kelsea Jewell,Meike Piepenbring,Raymond F. Sullivan,Gareth W. Griffith,Stuart Bradley,Takayuki Aoki,Wendy Yoder,Yu-Ming Ju,Shannon M. Berch,Matt Trappe,Weijun Duan,Gregory Bonito,Ruth A. Taber,Gilberto Coelho,Gerald F. Bills,Austen R. D. Ganley,Reinhard Agerer,Laszlo Nagy,B. A. Roy,Thomas Læssøe,Nils Hallenberg,Hans Volker Tichy,Joost A. Stalpers,Ewald Langer,Markus Scholler,Dirk Krueger,Giovanni Pacioni,Reinhold Pöder,Taina Pennanen,Marina Capelari,Karen K. Nakasone,J. P. Tewari,Andrew N. Miller,Cony Decock,Sabine M. Huhndorf,Mark Wach,Helen S. Vishniac,David Yohalem,Matthew E. Smith,Anthony E. Glenn,Martin J. Spiering,Daniel L. Lindner,Conrad L. Schoch,Scott A. Redhead,Kelly Ivors,Steven N. Jeffers,József Geml,Florence Okafor,Frederick W. Spiegel,Damon Dewsbury,J. E. Carroll,Terri M. Porter,Catherine H. Pashley,Steven E. Carpenter,Gloria Abad,Kerstin Voigt,Brett E. Arenz,Andrew S. Methven,Shannon Schechter,Paula Vance,Dan Mahoney,Seogchan Kang,John P. Rheeder,James William Montague Mehl,Matthew Greif,George Ndzi Ngala,Joseph F. Ammirati,Masako Kawasaki,Yuan Gwo-Fang,Tadahiko Matsumoto,David Smith,Gina L. Koenig,Daniel L. Luoma,Tom W. May,Marco Leonardi,Lynne Sigler,D. L. Taylor,Cara M. Gibson,Thomas J. Sharpton,David L. Hawksworth,José Carmine Dianese,Steven A. Trudell,Barbara Paulus,Mahajabeen Padamsee,Philippe Callac,Nelson Lima,Merlin M. White,C. Barreau,M. A. Juncai,Bart Buyck,Richard K. Rabeler,Mark R. Liles,Dwayne Estes,Richard Carter,J. M. Herr,Gregory T. Chandler,Jennifer Kerekes,Jennifer Cruse-Sanders,R. Galan Marquez,Egon Horak,Michael S. Fitzsimons,Heidi Döring,Su Yao,Nicole A. Hynson,Martin Ryberg,A. E. Arnold,Karen W. Hughes +255 more
TL;DR: GenBank, the public repository for nucleotide and protein sequences, is a critical resource for molecular biology, evolutionary biology, and ecology as discussed by the authors, and some attention has been drawn to sequence errors ([1][1]), common annotation errors also reduce the value of this database.
Journal Article
Preserving accuracy in GenBank
Martin I. Bidartondo,Thomas D. Bruns,Meredith Blackwell,Ivan P. Edwards,Andy F. S. Taylor,Thomas R. Horton,Ning Zhang,Urmas Kõljalg,Georgiana May,Thomas W. Kuyper,James D. Bever,Gregory S. Gilbert,John W. Taylor,Todd Z. DeSantis,Anne Pringle,James Borneman,Greg Thorn,Mary L. Berbee,Gregory M. Mueller,Gary L. Andersen,Else C. Vellinga,Sara Branco,Ian C. Anderson,Ian A. Dickie,Peter G. Avis,Sari Timonen,Rasmus Kjøller,D. J. Lodge,Richard M. Bateman,Andy Purvis,Pedro W. Crous,Christine V. Hawkes,Timothy G. Barraclough,Austin Burt,Ralf Nilsson,Karl-Henrik Larsson,Ian J. Alexander,Jean-Marc Moncalvo,Jean A. Bérubé,Joseph W. Spatafora,H. Thorsten Lumbsch,Jaime E. Blair,Sung-Oui Suh,Donald H. Pfister,Manfred Binder,Eric W.A. Boehm,Linda M. Kohn,Juan L. Mata,Paul S. Dyer,Gi-Ho Sung,Bryn T. M. Dentinger,Emory G. Simmons,Richard E. Baird,Thomas J. Volk,Brian A. Perry,Richard W. Kerrigan,Jinx Campbell,Jeewon Rajesh,Don R. Reynolds,David M. Geiser,Richard A. Humber,Natasha Hausmann,Timothy M. Szaro,Jason E. Stajich,Allen C. Gathman,Kabir G. Peay,Terry W. Henkel,Clare H. Robinson,Patricia J. Pukkila,Nhu H. Nguyen,Christopher F. Villalta,Peter G. Kennedy,Sarah E. Bergemann,M. Catherine Aime,Frank Kauff,Andrea Porras-Alfaro,Cécile Gueidan,Andreas Beck,Birgitte Andersen,Stephen M. Marek,Jo Anne Crouch,Julia Kerrigan,Jean B. Ristaino,Kathie T. Hodge,Gretchen A. Kuldau,Gary J. Samuels,Huzefa A. Raja,Hermann Voglmayr,Monique Gardes,David P. Janos,Jack D. Rogers,Paul F. Cannon,Sandra W. Woolfolk,H. C. Kistler,Michael A. Castellano,Sandra L. Maldonado-Ramírez,Paul M. Kirk,J. J. Farrar,Todd W. Osmundson,Randolph S. Currah,Vladimir Vujanovic,Weidong Chen,Richard P. Korf,Zahi K. Atallah,Ken J. Harrison,Josep Guarro,Scott T. Bates,Pierluigi Bonello,Paul D. Bridge,Wiley A. Schell,Walter Rossi,Jan Stenlid,Jens Christian Frisvad,R. M. Miller,Scott E. Baker,Heather E. Hallen,Jeffrey E. Janso,Andrew W. Wilson,Kenneth E. Conway,Louise M. Egerton-Warburton,Zheng Wang,Darin M. Eastburn,Wellcome W. Hong Ho,Scott Kroken,Marc Stadler,Gillian Turgeon,Robert W. Lichtwardt,Elwin L. Stewart,Mats Wedin,De Wei Li,Janice Y. Uchida,Ari Jumpponen,Ron J. Deckert,Henry J. Beker,Scott O. Rogers,Jianping Xu,Peter R. Johnston,R. A. Shoemaker,Miao Liu,Guilhermina Marques,Brett A. Summerell,Serge Sokolski,Ulf Thrane,Paul Widden,Johann N. Bruhn,Virginia Bianchinotti,Dorothy E. Tuthill,Timothy J. Baroni,G. L. Barron,Kentaro Hosaka,Kelsea Jewell,Meike Piepenbring,Raymond F. Sullivan,Gareth W. Griffith,Stuart Bradley,Takayuki Aoki,Wendy Yoder,Yu-Ming Ju,Shannon M. Berch,Matt Trappe,Weijun Duan,Gregory Bonito,Ruth A. Taber,Gilberto Coelho,Gerald F. Bills,Austen R. D. Ganley,Reinhard Agerer,Laszlo Nagy,B. A. Roy,Thomas Læssøe,Nils Hallenberg,Hans-Volker Tichy,Joost A. Stalpers,Ewald Langer,Markus Scholler,Dirk Krueger,Giovanni Pacioni,Reinhold Poeder,Taina Pennanen,Marina Capelari,Karen K. Nakasone,J. P. Tewari,Andrew N. Miller,Cony Decock,Sabine M. Huhndorf,Mark Wach,Helen S. Vishniac,David Yohalem,Matthew E. Smith,Anthony E. Glenn,Martin J. Spiering,Daniel L. Lindner,Conrad L. Schoch,Scott A. Redhead,Kelly Ivors,Steven N. Jeffers,József Geml,Florence Okafor,Frederick W. Spiegel,Damon Dewsbury,J. E. Carroll,Terri M. Porter,Catherine H. Pashley,Steven E. Carpenter,Gloria Abad,Kerstin Voigt,Brett E. Arenz,Andrew S. Methven,Shannon Schechter,Paula Vance,Dan Mahoney,Seogchan Kang,John P. Rheeder,James William Montague Mehl,Matthew Greif,George Ndzi Ngala,Joseph F. Ammirati,Masako Kawasaki,Yuan Gwo-Fang,Tadahiko Matsumoto,David Smith,Gina L. Koenig,Daniel L. Luoma,Tom W. May,Marco Leonardi,Lynne Sigler,D. L. Taylor,Cara M. Gibson,Thomas J. Sharpton,David L. Hawksworth,José Carmine Dianese,Steven A. Trudell,Barbara Paulus,Mahajabeen Padamsee,Philippe Callac,Nelson Lima,Merlin M. White,C. Barreau,M. A. Juncai,Bart Buyck,Richard K. Rabeler,Mark R. Liles,Dwayne Estes,Richard Carter,Josh Herr,Gregory T. Chandler,Jennifer Kerekes,Jennifer Cruse-Sanders,R. Galan Marquez,Egon Horak,Michael S. Fitzsimons,Heidi Doering,Su Yao,Nicole A. Hynson,Martin Ryberg,A. E. Arnold,Karen W. Hughes +256 more
TL;DR: GenBank, the public repository for nucleotide and protein sequences, is a critical resource for molecular biology, evolutionary biology, and ecology and some attention has been drawn to sequence errors.