Aix-Marseille University

About: Aix-Marseille University is a education organization based out in Marseille, France. It is known for research contribution in the topics: Population & Galaxy. The organization has 24326 authors who have published 54240 publications receiving 1455416 citations. The organization is also known as: University Aix-Marseille & université d'Aix-Marseille.

The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry

Abstract: We sequenced and compared the genomes of the Dothideomycete fungal plant pathogens Cladosporium fulvum (Cfu) (syn. Passalora fulva) and Dothistroma septosporum (Dse) that are closely related phylogenetically, but have different lifestyles and hosts. Although both fungi grow extracellularly in close contact with host mesophyll cells, Cfu is a biotroph infecting tomato, while Dse is a hemibiotroph infecting pine. The genomes of these fungi have a similar set of genes (70% of gene content in both genomes are homologs), but differ significantly in size (Cfu >61.1-Mb; Dse 31.2-Mb), which is mainly due to the difference in repeat content (47.2% in Cfu versus 3.2% in Dse). Recent adaptation to different lifestyles and hosts is suggested by diverged sets of genes. Cfu contains an α-tomatinase gene that we predict might be required for detoxification of tomatine, while this gene is absent in Dse. Many genes encoding secreted proteins are unique to each species and the repeat-rich areas in Cfu are enriched for these species-specific genes. In contrast, conserved genes suggest common host ancestry. Homologs of Cfu effector genes, including Ecp2 and Avr4, are present in Dse and induce a Cf-Ecp2- and Cf-4-mediated hypersensitive response, respectively. Strikingly, genes involved in production of the toxin dothistromin, a likely virulence factor for Dse, are conserved in Cfu, but their expression differs markedly with essentially no expression by Cfu in planta. Likewise, Cfu has a carbohydrate-degrading enzyme catalog that is more similar to that of necrotrophs or hemibiotrophs and a larger pectinolytic gene arsenal than Dse, but many of these genes are not expressed in planta or are pseudogenized. Overall, comparison of their genomes suggests that these closely related plant pathogens had a common ancestral host but since adapted to different hosts and lifestyles by a combination of differentiated gene content, pseudogenization, and gene regulation.

Metals for a low-carbon society

Abstract: Renewable energy requires infrastructures built with metals whose extraction requires more and more energy. More mining is unavoidable, but increased recycling, substitution and careful design of new high-tech devices will help meet the growing demand.

A multiprotein supercomplex controlling oncogenic signalling in lymphoma

Abstract: B cell receptor (BCR) signalling has emerged as a therapeutic target in B cell lymphomas, but inhibiting this pathway in diffuse large B cell lymphoma (DLBCL) has benefited only a subset of patients1. Gene expression profiling identified two major subtypes of DLBCL, known as germinal centre B cell-like and activated B cell-like (ABC)2,3, that show poor outcomes after immunochemotherapy in ABC. Autoantigens drive BCR-dependent activation of NF-κB in ABC DLBCL through a kinase signalling cascade of SYK, BTK and PKCβ to promote the assembly of the CARD11-BCL10-MALT1 adaptor complex, which recruits and activates IκB kinase4-6. Genome sequencing revealed gain-of-function mutations that target the CD79A and CD79B BCR subunits and the Toll-like receptor signalling adaptor MYD885,7, with MYD88(L265P) being the most prevalent isoform. In a clinical trial, the BTK inhibitor ibrutinib produced responses in 37% of cases of ABC1. The most striking response rate (80%) was observed in tumours with both CD79B and MYD88(L265P) mutations, but how these mutations cooperate to promote dependence on BCR signalling remains unclear. Here we used genome-wide CRISPR-Cas9 screening and functional proteomics to determine the molecular basis of exceptional clinical responses to ibrutinib. We discovered a new mode of oncogenic BCR signalling in ibrutinib-responsive cell lines and biopsies, coordinated by a multiprotein supercomplex formed by MYD88, TLR9 and the BCR (hereafter termed the My-T-BCR supercomplex). The My-T-BCR supercomplex co-localizes with mTOR on endolysosomes, where it drives pro-survival NF-κB and mTOR signalling. Inhibitors of BCR and mTOR signalling cooperatively decreased the formation and function of the My-T-BCR supercomplex, providing mechanistic insight into their synergistic toxicity for My-T-BCR+ DLBCL cells. My-T-BCR supercomplexes characterized ibrutinib-responsive malignancies and distinguished ibrutinib responders from non-responders. Our data provide a framework for the rational design of oncogenic signalling inhibitors in molecularly defined subsets of DLBCL.

Search for the decay B-s(0) -> (D)over-bar(0) f(0)(980)

Abstract: A search for $B_s^0 \to \overline{D}^{0} f_{0}(980)$ decays is performed using $3.0\, {\rm fb}^{-1}$ of $pp$ collision data recorded by the LHCb experiment during 2011 and 2012. The $f_{0}(980)$ meson is reconstructed through its decay to the $\pi^{+}\pi^{-}$ final state in the mass window $900\, {\rm MeV}/c^{2} < m(\pi^{+}\pi^{-}) < 1080\, {\rm MeV}/c^{2}$. No significant signal is observed. The first upper limits on the branching fraction of $\mathcal{B}(B_s^0 \to \overline{D}^{0} f_{0}(980)) < 3.1\,(3.4) \times 10^{-6}$ are set at $90\,\%$ ($95\,\%$) confidence level.

Spectrophotometric time series of SN 2011fe from the Nearby Supernova Factory

Abstract: We present 32 epochs of optical (3300−9700 A) spectrophotometric observations of the nearby quintessential “normal” type Ia supernova (SN Ia) SN 2011fe in the galaxy M101, extending from −15 to +97 d with respect to B -band maximum, obtained by the Nearby Supernova Factory collaboration. SN 2011fe is the closest (μ = 29.04) and brightest (B max = 9.94 mag) SN Ia observed since the advent of modern large scale programs for the intensive periodic followup of supernovae. Both synthetic light curve measurements and spectral feature analysis attest to the normality of SN 2011fe. There is very little evidence for reddening in its host galaxy. The homogeneous calibration, intensive time sampling, and high signal-to-noise ratio of the data set make it unique. Thus it is ideal for studying the physics of SN Ia explosions in detail, and for furthering the use of SNe Ia as standardizable candles for cosmology. Several such applications are shown, from the creation of a bolometric light curve and measurement of the 56 Ni mass, to the simulation ofdetection thresholds for unburned carbon, direct comparisons with other SNe Ia, and existing spectral templates.