scispace - formally typeset
Open AccessJournal ArticleDOI

Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.

Alison P. Klein, +132 more
- 08 Feb 2018 - 
- Vol. 9, Iss: 1, pp 556-556
Reads0
Chats0
TLDR
The largest pancreatic cancer GWAS to date, including 9040 patients and 12,496 controls of European ancestry from the PANScan and the Pancreatic Cancer Case Control Consortium (PanC4), was performed in this paper.
Abstract
In 2020, 146,063 deaths due to pancreatic cancer are estimated to occur in Europe and the United States combined. To identify common susceptibility alleles, we performed the largest pancreatic cancer GWAS to date, including 9040 patients and 12,496 controls of European ancestry from the Pancreatic Cancer Cohort Consortium (PanScan) and the Pancreatic Cancer Case-Control Consortium (PanC4). Here, we find significant evidence of a novel association at rs78417682 (7p12/TNS3, P = 4.35 × 10−8). Replication of 10 promising signals in up to 2737 patients and 4752 controls from the PANcreatic Disease ReseArch (PANDoRA) consortium yields new genome-wide significant loci: rs13303010 at 1p36.33 (NOC2L, P = 8.36 × 10−14), rs2941471 at 8q21.11 (HNF4G, P = 6.60 × 10−10), rs4795218 at 17q12 (HNF1B, P = 1.32 × 10−8), and rs1517037 at 18q21.32 (GRP, P = 3.28 × 10−8). rs78417682 is not statistically significantly associated with pancreatic cancer in PANDoRA. Expression quantitative trait locus analysis in three independent pancreatic data sets provides molecular support of NOC2L as a pancreatic cancer susceptibility gene.

read more

Content maybe subject to copyright    Report

Citations
More filters
Journal ArticleDOI

Pancreatic cancer epidemiology: understanding the role of lifestyle and inherited risk factors.

TL;DR: A review of the established modifiable and inherited risk factors for pancreatic cancer can be found in this paper, where the authors provide an up-to-date overview of these risk factors.
Journal ArticleDOI

Integrative multi-omics analysis of intestinal organoid differentiation.

TL;DR: By applying an integrative systems biology approach, multiple layers of gene expression regulation are uncovered, which contribute to lineage specification and plasticity of the mouse small intestinal epithelium.
Journal ArticleDOI

Pan-cancer analysis demonstrates that integrating polygenic risk scores with modifiable risk factors improves risk prediction.

TL;DR: It is shown that incorporating cancer-specific PRS measurably improves prediction accuracy for most cancers, but the magnitude of this improvement varies substantially and the potential for improving cancer risk assessment by integrating genetic risk scores is illustrated.
Journal ArticleDOI

Pancreatic cancer evolution and heterogeneity: integrating omics and clinical data.

TL;DR: In this paper, the authors present an evolutionary model of pancreatic ductal adenocarcinoma (PDAC) progression based on genomics studies of human PDAC.
References
More filters
Journal ArticleDOI

Cancer statistics, 2016

TL;DR: Overall cancer incidence trends are stable in women, but declining by 3.1% per year in men, much of which is because of recent rapid declines in prostate cancer diagnoses, and brain cancer has surpassed leukemia as the leading cause of cancer death among children and adolescents.
Journal ArticleDOI

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

TL;DR: It is shown that accurate gene-level abundance estimates are best obtained with large numbers of short single-end reads, and estimates of the relative frequencies of isoforms within single genes may be improved through the use of paired- end reads, depending on the number of possible splice forms for each gene.
Journal ArticleDOI

A Map of Human Genome Variation From Population-Scale Sequencing

TL;DR: The 1000 Genomes Project aims to provide a deep characterization of human genome sequence variation as a foundation for investigating the relationship between genotype and phenotype as mentioned in this paper, and the results of the pilot phase of the project, designed to develop and compare different strategies for genomewide sequencing with high-throughput platforms.
Journal ArticleDOI

Projecting Cancer Incidence and Deaths to 2030: The Unexpected Burden of Thyroid, Liver, and Pancreas Cancers in the United States

TL;DR: Pancreas and liver cancers are projected to surpass breast, prostate, and colorectal cancers to become the second and third leading causes of cancer-related death by 2030, respectively.
Related Papers (5)

Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer

Laufey T. Amundadottir, +77 more
- 01 Sep 2009 - 

A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33

Gloria M. Petersen, +82 more
- 01 Mar 2010 - 

Whole genomes redefine the mutational landscape of pancreatic cancer.

Nicola Waddell, +88 more
- 26 Feb 2015 -