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Journal ArticleDOI

Protein Conformational Dynamics Probed by Single-Molecule Electron Transfer

TLDR
By probing the fluorescence lifetime of the single flavin on a photon-by-photon basis, the variation of flavin-tyrosine distance over time is observed, suggesting the existence of multiple interconverting conformers related to the fluctuating catalytic reactivity.
Abstract
Electron transfer is used as a probe for angstrom-scale structural changes in single protein molecules. In a flavin reductase, the fluorescence of flavin is quenched by a nearby tyrosine residue by means of photo-induced electron transfer. By probing the fluorescence lifetime of the single flavin on a photon-by-photon basis, we were able to observe the variation of flavin-tyrosine distance over time. We could then determine the potential of mean force between the flavin and the tyrosine, and a correlation analysis revealed conformational fluctuation at multiple time scales spanning from hundreds of microseconds to seconds. This phenomenon suggests the existence of multiple interconverting conformers related to the fluctuating catalytic reactivity.

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Citations
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Occupation times and ergodicity breaking in biased continuous time random walks

TL;DR: In this article, the authors investigated the statistical properties of continuous time random walk (CTRW) models with infinite average sojourn time and showed that the occupation time probability density function exhibits bimodal U or trimodal W shape.
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Langevin equation approach to diffusion magnetic resonance imaging.

TL;DR: The calculation may be simply extended to anomalous diffusion using a fractional generalization of the Langevin equation proposed by Lutz pertaining to the fractional Brownian motion of a free particle coupled to a fractal heat bath.
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Nobel Prize in Chemistry: Celebrating optical nanoscopy

TL;DR: The award of this year's Nobel Prize in Chemistry to the pioneers of various optical schemes capable of achieving super-resolution and single-molecule detection is recognition of a revolution in optical imaging.
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Confinement and Viscoelastic effects on Chain Closure Dynamics

TL;DR: This paper determines the scaling relationship between the mean closure time t(c) of a flexible chain and the length N of its contour under the following separate conditions: confinement of the chain to a sphere of radius d and modulation of its dynamics by colored Gaussian noise.
References
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疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

宁北芳, +1 more
TL;DR: PfPMP1)与感染红细胞、树突状组胞以及胎盘的单个或多个受体作用,在黏附及免疫逃避中起关键的作�ly.
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Electron transfers in chemistry and biology

TL;DR: In this paper, the electron transfer reactions between ions and molecules in solution have been the subject of considerable experimental study during the past three decades, including charge transfer, photoelectric emission spectra, chemiluminescent electron transfer, and electron transfer through frozen media.
Journal ArticleDOI

Formation of glasses from liquids and biopolymers.

TL;DR: The onset of a sharp change in ddT( is the Debye-Waller factor and T is temperature) in proteins, which is controversially indentified with the glass transition in liquids, is shown to be general for glass formers and observable in computer simulations of strong and fragile ionic liquids, where it proves to be close to the experimental glass transition temperature.
Journal ArticleDOI

The energy landscapes and motions of proteins.

TL;DR: The concepts that emerge from studies of the conformational substates and the motions between them permit a quantitative discussion of one simple reaction, the binding of small ligands such as carbon monoxide to myoglobin.
Journal ArticleDOI

Fluorescence spectroscopy of single biomolecules.

TL;DR: The progress in applying single-molecule detection and single-Molecule spectroscopy at room temperature by laser-induced fluorescence with the use of fluorophores that are site-specifically attached to macromolecules is reviewed.
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