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Journal ArticleDOI

Protein Conformational Dynamics Probed by Single-Molecule Electron Transfer

TLDR
By probing the fluorescence lifetime of the single flavin on a photon-by-photon basis, the variation of flavin-tyrosine distance over time is observed, suggesting the existence of multiple interconverting conformers related to the fluctuating catalytic reactivity.
Abstract
Electron transfer is used as a probe for angstrom-scale structural changes in single protein molecules. In a flavin reductase, the fluorescence of flavin is quenched by a nearby tyrosine residue by means of photo-induced electron transfer. By probing the fluorescence lifetime of the single flavin on a photon-by-photon basis, we were able to observe the variation of flavin-tyrosine distance over time. We could then determine the potential of mean force between the flavin and the tyrosine, and a correlation analysis revealed conformational fluctuation at multiple time scales spanning from hundreds of microseconds to seconds. This phenomenon suggests the existence of multiple interconverting conformers related to the fluctuating catalytic reactivity.

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Citations
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Journal ArticleDOI

Exact analytical evaluation of time dependent transmission coefficient from the method of reactive flux for an inverted parabolic barrier.

TL;DR: An elegant way of combining the normal mode analysis and the method of reactive flux to evaluate the time dependent transmission coefficient for a classical particle coupled to a set of harmonic oscillators, surmounting a one dimensional barrier is demonstrated.
Journal ArticleDOI

Describing the dynamics of processes consisting simultaneously of Poissonian and non-Poissonian kinetics

TL;DR: In this article, the authors provide a concise treatment of such random systems which are affected by regular and non-Poissonian kinetics at the same time, and provide a controlled approximation scheme for this equation.
Proceedings ArticleDOI

High-performance silicon single-photon avalanche diode array

TL;DR: In this paper, the authors present two possible approaches to make SPAD array more and more competitive: employing a standard industrial CMOS technology or developing a dedicated technology. And they discuss several issues: dark counts, quantum efficiency, crosstalk, timing performance.
Journal ArticleDOI

Origin of 1/f noise in hydration dynamics on lipid membrane surfaces

TL;DR: The results suggest that the 1/f noise attributed to the correlated renewal process may contribute to the stability of the hydration layers and lipid membranes.
Journal ArticleDOI

Electron transfer reaction in a single protein molecule observed by total internal reflection fluorescence microscopy.

TL;DR: The protein ET reaction was found to be explained by the distribution of the rate constants, and it is suggested that the origin of this rate distribution is the distance change associated with the structural fluctuation in the protein molecule.
References
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疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

宁北芳, +1 more
TL;DR: PfPMP1)与感染红细胞、树突状组胞以及胎盘的单个或多个受体作用,在黏附及免疫逃避中起关键的作�ly.
Journal ArticleDOI

Electron transfers in chemistry and biology

TL;DR: In this paper, the electron transfer reactions between ions and molecules in solution have been the subject of considerable experimental study during the past three decades, including charge transfer, photoelectric emission spectra, chemiluminescent electron transfer, and electron transfer through frozen media.
Journal ArticleDOI

Formation of glasses from liquids and biopolymers.

TL;DR: The onset of a sharp change in ddT( is the Debye-Waller factor and T is temperature) in proteins, which is controversially indentified with the glass transition in liquids, is shown to be general for glass formers and observable in computer simulations of strong and fragile ionic liquids, where it proves to be close to the experimental glass transition temperature.
Journal ArticleDOI

The energy landscapes and motions of proteins.

TL;DR: The concepts that emerge from studies of the conformational substates and the motions between them permit a quantitative discussion of one simple reaction, the binding of small ligands such as carbon monoxide to myoglobin.
Journal ArticleDOI

Fluorescence spectroscopy of single biomolecules.

TL;DR: The progress in applying single-molecule detection and single-Molecule spectroscopy at room temperature by laser-induced fluorescence with the use of fluorophores that are site-specifically attached to macromolecules is reviewed.
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