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Open AccessJournal ArticleDOI

Test sensitivity is secondary to frequency and turnaround time for COVID-19 screening.

TLDR
It is demonstrated that effective screening depends largely on frequency of testing and speed of reporting and is only marginally improved by high test sensitivity, and should prioritize accessibility, frequency, and sample-to-answer time.
Abstract
The COVID-19 pandemic has created a public health crisis. Because SARS-CoV-2 can spread from individuals with presymptomatic, symptomatic, and asymptomatic infections, the reopening of societies and the control of virus spread will be facilitated by robust population screening, for which virus testing will often be central. After infection, individuals undergo a period of incubation during which viral titers are too low to detect, followed by exponential viral growth, leading to peak viral load and infectiousness and ending with declining titers and clearance. Given the pattern of viral load kinetics, we model the effectiveness of repeated population screening considering test sensitivities, frequency, and sample-to-answer reporting time. These results demonstrate that effective screening depends largely on frequency of testing and speed of reporting and is only marginally improved by high test sensitivity. We therefore conclude that screening should prioritize accessibility, frequency, and sample-to-answer time; analytical limits of detection should be secondary.

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Citations
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Journal ArticleDOI

Rapid antigen screening of asymptomatic people as a public health tool to combat COVID-19.

TL;DR: In this article, the authors have been trying to combat a second wave of the coronavirus disease 2019 (COVID-19) pandemic without using all the available tools.
Journal ArticleDOI

A lab-on-a-chip platform for integrated extraction and detection of SARS-CoV-2 RNA in resource-limited settings

TL;DR: In this paper, an integrated on-chip platform coupled RNA extraction based on immiscible filtration assisted by surface tension (IFAST), with RNA amplification and detection via colorimetric reverse-transcription loop mediated isothermal amplification (RT-LAMP), using two sets of primers targeting open reading frame1a (ORF1a) and nucleoprotein (N) genes of SARS-CoV-2.
Journal ArticleDOI

Increased SARS-CoV-2 Testing Capacity with Pooled Saliva Samples.

TL;DR: This article analyzed feasibility of pooling saliva samples for severe acute respiratory syndrome coronavirus 2 testing and found that sensitivity decreased according to pool size: 5 samples/pool, 7.4% reduction; 10 samples/Pool, 11.1%; and 20 samples/ Pool, 14.8%.
Journal ArticleDOI

A viral load-based model for epidemic spread on spatial networks.

TL;DR: In this article, the authors propose a Boltzmann-type kinetic model of the spreading of an infectious disease on a network, which describes the connections among countries, cities or districts depending on the spatial scale of interest.
References
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Journal ArticleDOI

The Incubation Period of Coronavirus Disease 2019 (COVID-19) From Publicly Reported Confirmed Cases: Estimation and Application.

TL;DR: The results support current proposals for the length of quarantine or active monitoring of persons potentially exposed to SARS-CoV-2, although longer monitoring periods might be justified in extreme cases.
Journal ArticleDOI

Temporal dynamics in viral shedding and transmissibility of COVID-19.

TL;DR: It is estimated that 44% (95% confidence interval, 25–69%) of secondary cases were infected during the index cases’ presymptomatic stage, in settings with substantial household clustering, active case finding and quarantine outside the home.
Journal ArticleDOI

Sensitivity of Chest CT for COVID-19: Comparison to RT-PCR

TL;DR: In a series of 51 patients with chest CT and real-time polymerase chain reaction assay (RT-PCR) performed within 3 days, the sensitivity of CT for 2019 novel coronavirus infection was 98% and that ...
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