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Christopher E. Gillies
Researcher at University of Michigan
Publications - 38
Citations - 4523
Christopher E. Gillies is an academic researcher from University of Michigan. The author has contributed to research in topics: Exome & Population. The author has an hindex of 13, co-authored 35 publications receiving 3375 citations.
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Journal ArticleDOI
A reference panel of 64,976 haplotypes for genotype imputation
Shane A. McCarthy,Sayantan Das,Warren W. Kretzschmar,Olivier Delaneau,Andrew R. Wood,Alexander Teumer,Hyun Min Kang,Christian Fuchsberger,Petr Danecek,Kevin Sharp,Yang Luo,C Sidore,Alan Kwong,Nicholas J. Timpson,Seppo Koskinen,Scott I. Vrieze,Laura J. Scott,He Zhang,Anubha Mahajan,Jan H. Veldink,Ulrike Peters,Ulrike Peters,Carlos N. Pato,Cornelia M. van Duijn,Christopher E. Gillies,Ilaria Gandin,Massimo Mezzavilla,Arthur Gilly,Massimiliano Cocca,Michela Traglia,Andrea Angius,Jeffrey C. Barrett,D.I. Boomsma,Kari Branham,Gerome Breen,Gerome Breen,Chad M. Brummett,Fabio Busonero,Harry Campbell,Andrew T. Chan,Sai Chen,Emily Y. Chew,Francis S. Collins,Laura J Corbin,George Davey Smith,George Dedoussis,Marcus Dörr,Aliki-Eleni Farmaki,Luigi Ferrucci,Lukas Forer,Ross M. Fraser,Stacey Gabriel,Shawn Levy,Leif Groop,Leif Groop,Tabitha A. Harrison,Andrew T. Hattersley,Oddgeir L. Holmen,Kristian Hveem,Matthias Kretzler,James Lee,Matt McGue,Thomas Meitinger,David Melzer,Josine L. Min,Karen L. Mohlke,John B. Vincent,Matthias Nauck,Deborah A. Nickerson,Aarno Palotie,Aarno Palotie,Michele T. Pato,Nicola Pirastu,Melvin G. McInnis,J. Brent Richards,J. Brent Richards,Cinzia Sala,Veikko Salomaa,David Schlessinger,Sebastian Schoenherr,P. Eline Slagboom,Kerrin S. Small,Tim D. Spector,Dwight Stambolian,Marcus A. Tuke,Jaakko Tuomilehto,Leonard H. van den Berg,Wouter van Rheenen,Uwe Völker,Cisca Wijmenga,Daniela Toniolo,Eleftheria Zeggini,Paolo Gasparini,Matthew G. Sampson,James F. Wilson,Timothy M. Frayling,Paul I.W. de Bakker,Morris A. Swertz,Steven A. McCarroll,Charles Kooperberg,Annelot M. Dekker,David Altshuler,Cristen J. Willer,William G. Iacono,Samuli Ripatti,Nicole Soranzo,Nicole Soranzo,Klaudia Walter,Anand Swaroop,Francesco Cucca,Carl A. Anderson,Richard M. Myers,Michael Boehnke,Mark I. McCarthy,Mark I. McCarthy,Richard Durbin,Gonçalo R. Abecasis,Jonathan Marchini +117 more
TL;DR: A reference panel of 64,976 human haplotypes at 39,235,157 SNPs constructed using whole-genome sequence data from 20 studies of predominantly European ancestry leads to accurate genotype imputation at minor allele frequencies as low as 0.1% and a large increase in the number of SNPs tested in association studies.
A reference panel of 64,976 haplotypes for genotype imputation
Shane A. McCarthy,Sayantan Das,Warren W. Kretzschmar,Olivier Delaneau,Andrew R. Wood,Alexander Teumer,Hyun Min Kang,Christian Fuchsberger,Petr Danecek,Kevin Sharp,Yang Luo,Carlo Sidorel,Alan Kwong,Nicholas J. Timpson,Seppo Koskinen,Scott I. Vrieze,Laura J. Scott,He Zhang,Anubha Mahajan,Jan H. Veldink,Ulrike Peters,Carlos N. Pato,Cornelia M. van Duijn,Christopher E. Gillies,Ilaria Gandin,Massimo Mezzavilla,Arthur Gilly,Massimiliano Cocca,Michela Traglia,Andrea Angius,Jeffrey C. Barrett,D.I. Boomsma,Kari Branham,Gerome Breen,Chad M. Brummett,Fabio Busonero,Harry Campbell,Andrew T. Chan,Sai Che,Emily Y. Chew,Francis S. Collins,Laura J Corbin,George Davey Smith,George Dedoussis,Marcus Dörr,Aliki-Eleni Farmaki,Luigi Ferrucci,Lukas Forer,Ross M. Fraser,Stacey Gabriel,Shawn Levy,Leif Groop,Tabitha A. Harrison,Andrew T. Hattersley,Oddgeir L. Holmen,Kristian Hveem,Matthias Kretzler,James Lee,Matt McGue,Thomas Meitinger,David Melzer,Josine L. Min,Karen L. Mohlke,John B. Vincent,Matthias Nauck,Deborah A. Nickerson,Aarno Palotie,Michele T. Pato,Nicola Pirastu,Melvin G. McInnis,J. Brent Richards,Cinzia Sala,Veikko Salomaa,David Schlessinger,Sebastian Schoenherr,P. Eline Slagboom,Kerrin S. Small,Tim D. Spector,Dwight Stambolian,Marcus A. Tuke,Jaakko Tuomilehto,Leonard H. van den Berg,Wouter van Rheenen,Uwe Völker,Cisca Wijmenga,Daniela Toniolo,Eleftheria Zeggini,Paolo Gasparini,Matthew G. Sampson,James F. Wilson,Timothy M. Frayling,Paul I.W. de Bakker,Morris A. Swertz,Steven A. McCarroll,Charles Kooperberg,Annelot M. Dekker,David Altshuler,Cristen J. Willer,William G. Iacono,Samuli Ripatti,Nicole Soranzo,Klaudia Walter,Anand Swaroop,Francesco Cucca,Carl A. Anderson,Richard M. Myers,Michael Boehnke,Mark I. McCarthy,Richard Durbin,Gonçalo R. Abecasis,Jonathan Marchini +110 more
TL;DR: In this article, a reference panel of 64,976 human haplotypes at 39,235,157 SNPs constructed using whole-genome sequence data from 20 studies of predominantly European ancestry is presented.
Journal ArticleDOI
Exome sequencing and analysis of 454,787 UK Biobank participants.
Joshua D. Backman,Alexander H. Li,Anthony Marcketta,Dylan Sun,Joelle Mbatchou,Michael D. Kessler,Christian Benner,Daren Liu,Adam E. Locke,Suganthi Balasubramanian,Ashish Yadav,Nilanjana Banerjee,Christopher E. Gillies,Amy Damask,Simon Liu,Xiaodong Bai,Alicia Hawes,Evan Maxwell,Lauren Gurski,Kyoko Watanabe,Jack A. Kosmicki,Veera M. Rajagopal,Jason Mighty,Marcus B. Jones,Lyndon J. Mitnaul,Eli A. Stahl,Giovanni Coppola,Eric Jorgenson,Lukas Habegger,William J Salerno,Alan R. Shuldiner,Luca A. Lotta,John D. Overton,Michael N. Cantor,Jeffrey G. Reid,George D. Yancopoulos,Hyun Min Kang,Jonathan Marchini,Aris Baras,Gonçalo R. Abecasis,Manuel A. R. Ferreira +40 more
TL;DR: This paper used exome sequencing to explore protein altering variants and their consequences in 454,787 UK Biobank study participants and identified 12 million coding variants, including ~1 million loss-of-function and ~1.8 million deleterious missense variants.
Journal ArticleDOI
An eQTL Landscape of Kidney Tissue in Human Nephrotic Syndrome.
Christopher E. Gillies,Rosemary K B Putler,Rajasree Menon,Edgar A. Otto,Kalyn Yasutake,Viji Nair,Paul Hoover,Paul Hoover,David J. Lieb,Shuqiang Li,Sean Eddy,Damian Fermin,Michelle McNulty,John R. Sedor,Katherine MacRae Dell,Marleen Schachere,Kevin Lemley,Lauren Whitted,Tarak Srivastava,Connie Haney,Christine B. Sethna,Kalliopi Grammatikopoulos,Gerald B. Appel,Michael Toledo,Laurence Greenbaum,Chia-shi Wang,Brian Lee,Sharon G. Adler,Cynthia C. Nast,Janine LaPage,Ambarish M. Athavale,Alicia M. Neu,Sara Boynton,Fernando C. Fervenza,Marie C. Hogan,John C. Lieske,Vladimir Chernitskiy,Frederick J. Kaskel,Neelja Kumar,Patricia Flynn,Jeffrey B. Kopp,Eveleyn Castro-Rubio,Jodi Blake,Howard Trachtman,Olga Zhdanova,Frank Modersitzki,Suzanne Vento,Richard A. Lafayette,Kshama R. Mehta,Crystal A. Gadegbeku,Duncan B. Johnstone,Daniel C. Cattran,Michelle Hladunewich,Heather N. Reich,Paul Ling,Martin Romano,Alessia Fornoni,Laura Barisoni,Carlos Bidot,Matthias Kretzler,Debbie S. Gipson,Amanda Williams,Renee Pitter,Patrick H. Nachman,Keisha L. Gibson,Sandra Grubbs,Anne Froment,Lawrence B. Holzman,Kevin E.C. Meyers,Krishna Kallem,Fumei Cerecino,Kamal Sambandam,Elizabeth J. Brown,Natalie Johnson,Ashley Jefferson,Sangeeta Hingorani,Kathleen Tuttle,Laura Curtin,S. Dismuke,Ann Cooper,Barry I. Freedman,Jen Jar Lin,Stefanie Gray,Larua Barisoni,Brenda W. Gillespie,Laura H. Mariani,Matthew G. Sampson,Peter X.-K. Song,Johnathan Troost,Jarcy Zee,Emily Herreshoff,Colleen Kincaid,Chrysta Lienczewski,Tina Mainieri,Kevin Abbott,Cindy Roy,Tiina K. Urv,John Brooks,Nir Hacohen,Nir Hacohen,Krzysztof Kiryluk,Xiaoquan Wen +101 more
TL;DR: This study discovered GLOM and TI eQTLs, identified those that were tissue specific, deconvoluted them into cell-specific signals, and used them to characterize known GWAS alleles.
Journal ArticleDOI
Genetic Drivers of Kidney Defects in the DiGeorge Syndrome.
Esther Lopez-Rivera,Yangfan P. Liu,Miguel Verbitsky,Blair R. Anderson,Valentina P Capone,Edgar A. Otto,Zhonghai Yan,Adele Mitrotti,Jeremiah Martino,Nicholas J Steers,David Fasel,Katarina Vukojević,Rong Deng,Silvia E. Racedo,Qingxue Liu,Max Werth,Rik Westland,Asaf Vivante,Gabriel Makar,Gabriel Makar,Monica Bodria,Matthew G. Sampson,Christopher E. Gillies,Virginia Vega-Warner,Mariarosa Maiorana,Donald Petrey,Barry Honig,Vladimir J Lozanovski,Rémi Salomon,Rémi Salomon,Laurence Heidet,Wassila Carpentier,Dominique Gaillard,Alba Carrea,Loreto Gesualdo,Daniele Cusi,Claudia Izzi,Francesco Scolari,Joanna A.E. van Wijk,Adela Arapović,Mirna Saraga-Babić,Marijan Saraga,Nenad Kunac,Ali Samii,Donna M. McDonald-McGinn,Terrence B. Crowley,Elaine H. Zackai,Dorota Drozdz,Monika Miklaszewska,Marcin Tkaczyk,Przemysław Sikora,Maria Szczepańska,Małgorzata Mizerska-Wasiak,Grażyna Krzemień,Agnieszka Szmigielska,Marcin Zaniew,John M Darlow,Prem Puri,David E. Barton,David E. Barton,Emilio Casolari,Susan L. Furth,Bradley A. Warady,Zoran Gucev,Hakon Hakonarson,Hana Flögelová,Velibor Tasic,Anna Latos-Bielenska,Anna Materna-Kiryluk,Landino Allegri,Craig S. Wong,Iain A. Drummond,V. D’Agati,Akira Imamoto,Jonathan Barasch,Friedhelm Hildebrandt,Krzysztof Kiryluk,Richard P. Lifton,Bernice E. Morrow,Cécile Jeanpierre,Virginia E. Papaioannou,Gian Marco Ghiggeri,Ali G. Gharavi,Nicholas Katsanis,Simone Sanna-Cherchi +84 more
TL;DR: A recurrent 370‐kb deletion at the 22q11.2 locus is identified as a driver of kidney defects in the DiGeorge syndrome and in sporadic congenital kidney and urinary tract anomalies.