R
Rob Knight
Researcher at University of California, San Diego
Publications - 1188
Citations - 322479
Rob Knight is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Microbiome & Biology. The author has an hindex of 201, co-authored 1061 publications receiving 253207 citations. Previous affiliations of Rob Knight include Anschutz Medical Campus & University of Sydney.
Papers
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Proceedings ArticleDOI
Gut Instinct: Creating Scientific Theories with Online Learners
Vineet Pandey,Amnon Amir,Justine W. Debelius,Embriette R. Hyde,Tomasz Kosciolek,Rob Knight,Scott R. Klemmer +6 more
TL;DR: The Gut Instinct system embodies this approach, hosting online learning materials and invites learners to collaboratively brainstorm potential influences on people's microbiome, and highlights the promise and difficulty of double-bottom-line learning experiences.
Journal ArticleDOI
Synchronization measures of bursting data: application to the electrocorticogram of an auditory event-related experiment.
TL;DR: A synchronization measure in which nearest neighbors are determined across the ensemble is developed in which the results suggest a crude model of cortical connectivity.
Journal ArticleDOI
Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome
Carrie E. Jung,Jessica Chopyk,Ji Hyun Shin,Emily S. Lukacz,Linda Brubaker,Leila K. Schwanemann,Rob Knight,Alan J. Wolfe,David T. Pride +8 more
TL;DR: Generally, there was greater microbiome preservation with AA than without AA at all time points and temperatures, although not all results were statistically significant.
Posted Content
Ten Simple Rules for Reproducible Research in Jupyter Notebooks.
Adam Rule,Amanda Birmingham,Cristal Zuñiga,Ilkay Altintas,Shih-Cheng Huang,Rob Knight,Niema Moshiri,Mai H. Nguyen,Sara Brin Rosenthal,Fernando Perez,Peter W. Rose +10 more
TL;DR: A set of rules is developed to serve as a guide to scientists with a specific focus on computational notebook systems, such as Jupyter Notebooks, which have become a tool of choice for many applications.
Journal ArticleDOI
Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites.
Dimitrios J. Floros,Daniel Petras,Clifford A. Kapono,Alexey V. Melnik,Tie-Jun Ling,Rob Knight,Pieter C. Dorrestein +6 more
TL;DR: This work presents an LC-MS based approach for 3D plant imaging, which is scalable and allows the analysis of entire plants, and applied this approach in a case study to pepper and tomato plants.