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Rob Knight

Researcher at University of California, San Diego

Publications -  1188
Citations -  322479

Rob Knight is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Microbiome & Biology. The author has an hindex of 201, co-authored 1061 publications receiving 253207 citations. Previous affiliations of Rob Knight include Anschutz Medical Campus & University of Sydney.

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Conducting a microbiome study.

TL;DR: A Primer for researchers from diverse disciplines interested in conducting microbiome research discusses factors to be considered in the design, execution, and data analysis of microbiome studies.
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The under-recognized dominance of Verrucomicrobia in soil bacterial communities

TL;DR: Analysis of surface soils collected across a range of biomes in Antarctica, Europe, and the Americas shows that Verrucomicrobia appear to be dominant in many soil bacterial communities across the globe, making additional research on their ecology clearly necessary.
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Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations.

TL;DR: This work reviews how contaminant DNA and cross-contamination arise within microbiome studies and discusses their negative impacts, especially during the analysis of low microbial biomass samples, and puts forward a set of minimal experimental criteria, the 'RIDE' checklist, to improve the validity of futureLow microbial biomass research.
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Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

TL;DR: This work uses three large 16S rRNA datasets to test whether taxonomic information based on the full-length sequences can be recaptured by short reads that simulate the pyrosequencer outputs, and finds that different taxonomic assignment methods vary radically in their ability to recapture the taxonomic Information.