R
Rob Knight
Researcher at University of California, San Diego
Publications - 1188
Citations - 322479
Rob Knight is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Microbiome & Biology. The author has an hindex of 201, co-authored 1061 publications receiving 253207 citations. Previous affiliations of Rob Knight include Anschutz Medical Campus & University of Sydney.
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Journal ArticleDOI
Predicting fungal infection rate and severity with skin‐associated microbial communities on amphibians
Melissa Y. Chen,Jordan G. Kueneman,Antonio Gonzalez,Gregory Humphrey,Rob Knight,Valerie J. McKenzie +5 more
TL;DR: In this paper , the authors conducted a time-series experiment by sampling the skin-associated bacterial communities of five amphibian species before and after exposure to the fungal pathogen, Batrachochytrium dendrobaditis (Bd), to determine whether microbial community traits are predictors of, or are affected by, Bd infection risk and intensity.
Posted ContentDOI
Consistent, comprehensive and computationally efficient OTU definitions
Jai Ram Rideout,Jai Ram Rideout,Yan He,Jose A. Navas-Molina,William A. Walters,Luke K. Ursell,Sean M. Gibbons,Sean M. Gibbons,John Chase,Daniel McDonald,Antonio Gonzalez,Adam Robbins-Pianka,Jose C. Clemente,Jack A. Gilbert,Jack A. Gilbert,Susan M. Huse,Hongwei Zhou,Rob Knight,Rob Knight,J. Gregory Caporaso +19 more
Journal ArticleDOI
Genomic mutations within the host microbiome: Adaptive evolution or purifying selection
Jiachao Zhang,Rob Knight +1 more
TL;DR: In this paper , a review focuses on the coevolution of microbes within a microbiome, which shapes strain-level diversity both within and between host species, and discusses advances in methods and algorithms for annotating and analyzing microbial genomic mutations.
Book ChapterDOI
Individual Word Classification During Imagined Speech Using Intracranial Recordings
Stephanie Martin,Iñaki Iturrate,Peter Brunner,Peter Brunner,José del R. Millán,Gerwin Schalk,Gerwin Schalk,Rob Knight,Rob Knight,Brian N. Pasley +9 more
TL;DR: Results show for the first time that individual words in single trials were classified with statistically significant accuracy in the imagined speech condition, and delineate a number of key challenges to usage of speech imagery neural representations for clinical applications.
Posted ContentDOI
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
Justin P. Shaffer,Clarisse Marotz,Pedro Belda-Ferre,Cameron Martino,Stephen Wandro,Mehrbod Estaki,Rodolfo A. Salido,Carolina S. Carpenter,Livia S. Zaramela,Jeremiah J. Minich,MacKenzie Bryant,Karenina Sanders,Serena Fraraccio,Gail Ackermann,Gregory Humphrey,Austin D. Swafford,Sandrine Miller-Montgomery,Rob Knight +17 more
TL;DR: To enable simultaneous SARS-CoV-2 and microbial community profiling, the relative performance of two total nucleic acid extraction protocols are compared and one of the two protocols was equivalent or better than the authors' established DNA-based protocol.