R
Rob Knight
Researcher at University of California, San Diego
Publications - 1188
Citations - 322479
Rob Knight is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Microbiome & Biology. The author has an hindex of 201, co-authored 1061 publications receiving 253207 citations. Previous affiliations of Rob Knight include Anschutz Medical Campus & University of Sydney.
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Microbiology of death
TL;DR: A fresh look at the universal question "What happens when the authors die" is taken at the level of individual cells in the immune system.
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Stable tRNA-based phylogenies using only 76 nucleotides.
TL;DR: The results show that UniFrac can extract meaningful biological patterns from even phylogenies with high level of statistical inaccuracy and horizontal gene transfer, and that, overall, the pattern of tRNA evolution tracks universal phylogeny and provides a background against which to test hypotheses about the evolution of individual isoacceptors.
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Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.
Clarisse Marotz,Anukriti Sharma,Greg Humphrey,Neil Gottel,Christopher Daum,Jack A. Gilbert,Emiley A. Eloe-Fadrosh,Rob Knight +7 more
TL;DR: Results from single versus triplicate reactions for 16S amplicon sequencing are directly compared and there is no significant impact of adopting a less labor-intensive single-reaction protocol.
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The RNA structure alignment ontology.
James W. Brown,Amanda Birmingham,Paul E. Griffiths,Fabrice Jossinet,Rym Kachouri-Lafond,Rob Knight,B. Franz Lang,Neocles B. Leontis,Gerhard Steger,Jesse Stombaugh,Eric Westhof +10 more
TL;DR: The notion of "correspondence" is introduced, which is an equivalence relation between RNA elements in sets of sequences as the basis of an RNA alignment ontology, to enable the development of new representations of RNA data and of software tools that resolve the expansion problems with current RNA sequence alignments.
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Insight into the function and evolution of the Wood–Ljungdahl pathway in Actinobacteria
Jian-Yu Jiao,Li Fu,Zheng-Shuang Hua,Lan Liu,Nimaichand Salam,Pengfei Liu,Ai Ping Lv,Geng Wu,Wen Dong Xian,Qiyun Zhu,En-Min Zhou,Bao Zhu Fang,Bao Zhu Fang,Aharon Oren,Brian P. Hedlund,Hongchen Jiang,Rob Knight,Lei Cheng,Wen-Jun Li,Wen-Jun Li +19 more
TL;DR: In this paper, the authors compiled 42 actinobacterial metagenome-assembled genomes (MAGs) from new and existing metagenomic datasets and proposed three novel classes, Ca. Aquicultoria, C. Geothermincolia and Ca. Humimicrobiia.