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Open AccessJournal ArticleDOI

Detection of Succinate by Intestinal Tuft Cells Triggers a Type 2 Innate Immune Circuit.

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TLDR
It is shown that detection of the microbial metabolite succinate by tuft cells in the small intestine is sufficient to induce a type 2 immune response, suggesting that tuFT cells monitor microbial metabolites to initiate type 2 immunity.
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This article is published in Immunity.The article was published on 2018-07-17 and is currently open access. It has received 300 citations till now. The article focuses on the topics: Tuft cell & Type 2 immune response.

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Pathway paradigms revealed from the genetics of inflammatory bowel disease.

TL;DR: IBD is described as a model disease in the context of leveraging human genetics to dissect interactions in cellular and molecular pathways that regulate homeostasis of the mucosal immune system and future prospects for disease-subtype classification and therapeutic intervention are discussed.
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Epithelial cell–derived cytokines: more than just signaling the alarm

TL;DR: An overview of TSLP, IL-33, and IL-25 and the development of blocking antibodies that target these epithelial cell–derived cytokines is provides an overview of these central regulators of type 2 immunity.
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Coupling Krebs cycle metabolites to signalling in immunity and cancer.

TL;DR: This review summarizes the non-metabolic signalling mechanisms of succinate, fumarate, itaconate, 2-hydroxyglutarate isomers and acetyl-CoA in both immune cells and cancer cells.
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Organoids in immunological research

TL;DR: How organoids are being used in immunological research to understand the role of epithelial cell–immune cell interactions in tissue development and homeostasis, as well as in diseases such as cancer is discussed.
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Differential Activation of the Transcription Factor IRF1 Underlies the Distinct Immune Responses Elicited by Type I and Type III Interferons

TL;DR: It is suggested that IFN receptor compartmentalization and abundance confer a spatiotemporal division of labor where type III IFNs control viral spread at the site of the infection while restricting tissue damage; the transient induction of inflammatory responses by type I IFNs recruits immune effectors to promote protective immunity.
References
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Journal ArticleDOI

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

TL;DR: By following this protocol, investigators are able to gain an in-depth understanding of the biological themes in lists of genes that are enriched in genome-scale studies.
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STAR: ultrafast universal RNA-seq aligner

TL;DR: The Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure outperforms other aligners by a factor of >50 in mapping speed.
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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

TL;DR: The survey will help tool designers/developers and experienced end users understand the underlying algorithms and pertinent details of particular tool categories/tools, enabling them to make the best choices for their particular research interests.
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