Y
Ye Yin
Researcher at Beijing Genomics Institute
Publications - 42
Citations - 31154
Ye Yin is an academic researcher from Beijing Genomics Institute. The author has contributed to research in topics: Genome & Whole genome sequencing. The author has an hindex of 28, co-authored 40 publications receiving 22902 citations. Previous affiliations of Ye Yin include University of Copenhagen & Beijing Institute of Genomics.
Papers
More filters
Journal ArticleDOI
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction.
Wenqian Zhang,Ying Yu,Falk Hertwig,Falk Hertwig,Jean Thierry-Mieg,Wenwei Zhang,Danielle Thierry-Mieg,Jian Wang,Cesare Furlanello,Viswanath Devanarayan,Jie Cheng,Youping Deng,Barbara Hero,Huixiao Hong,Meiwen Jia,Li Li,Simon Lin,Yuri Nikolsky,André Oberthuer,Tao Qing,Zhenqiang Su,Ruth Volland,Charles Wang,May D. Wang,Junmei Ai,Davide Albanese,Shahab Asgharzadeh,Smadar Avigad,Wenjun Bao,Marina Bessarabova,Murray H. Brilliant,Benedikt Brors,Marco Chierici,Tzu-Ming Chu,Jibin Zhang,Richard Grundy,Min Max He,Scott J. Hebbring,Howard L. Kaufman,Samir Lababidi,Lee Lancashire,Yan Li,Xin X. Lu,Heng Luo,Heng Luo,Xiwen Ma,Baitang Ning,Rosa Noguera,Martin Peifer,John H. Phan,Frederik Roels,Frederik Roels,Carolina Rosswog,Susan Shao,Jie Shen,Jessica Theissen,Gian Paolo Tonini,Jo Vandesompele,Po-Yen Wu,Wenzhong Xiao,Joshua Xu,Weihong Xu,Jiekun Xuan,Yong Yang,Zhan Ye,Zirui Dong,Ke Zhang,Ye Yin,Chen Zhao,Yuanting Zheng,Russell D. Wolfinger,Tieliu Shi,Linda H. Malkas,Frank Berthold,Frank Berthold,Jun Wang,Weida Tong,Leming Shi,Leming Shi,Zhiyu Peng,Matthias Fischer,Matthias Fischer +81 more
TL;DR: It is demonstrated thatRNA-seq outperforms microarrays in determining the transcriptomic characteristics of cancer, while RNA-seq and microarray-based models perform similarly in clinical endpoint prediction.
Journal ArticleDOI
Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma.
Yun-Fan Sun,Liang Wu,Liang Wu,Yu Zhong,Kai-Qian Zhou,Yong Hou,Zifei Wang,Ze-Fan Zhang,J. Xie,Chunqing Wang,Dandan Chen,Yaling Huang,Xiaochan Wei,Ying-Hong Shi,Zhikun Zhao,Yue-Hua Li,Zi-Wei Guo,Qichao Yu,Liqin Xu,Giacomo Volpe,Shuang-Jian Qiu,Jian Zhou,Carl Ward,Hui-Chuan Sun,Ye Yin,Xun Xu,Xiangdong Wang,Miguel A. Esteban,Huanming Yang,Jian Wang,Michael Dean,Yaguang Zhang,Shiping Liu,Xin-Rong Yang,Jia Fan +34 more
TL;DR: A comprehensive picture of the HCC ecosystem provides deeper insights into immune evasion mechanisms associated with tumor relapse, including those that dampen DC antigen presentation and recruit innate-like CD8+ T cells.
Journal ArticleDOI
Genomic insights into salt adaptation in a desert poplar
Tao Ma,Junyi Wang,Gongke Zhou,Zhen Yue,Quanjun Hu,Yan Chen,Bingbing Liu,Qiang Qiu,Zhuo Wang,Jian Zhang,Kun Wang,Dechun Jiang,Caiyun Gou,Lili Yu,Dongliang Zhan,Ran Zhou,Wenchun Luo,Hui Ma,Yongzhi Yang,Shengkai Pan,Dongming Fang,Yandan Luo,Xia Wang,Gaini Wang,Juan Wang,Qian Wang,Xu Lu,Zhe Chen,Jinchao Liu,Yao Lu,Ye Yin,Huanming Yang,Richard J. Abbott,Yuxia Wu,Dongshi Wan,Jia Li,Tongming Yin,Martin Lascoux,Stephen P. DiFazio,Gerald A. Tuskan,Jun Wang,Jianquan Liu +41 more
TL;DR: The genome sequence of the desert poplar, Populus euphratica, which exhibits high tolerance to salt stress is reported, which provides an important background for understanding tree adaptation to salt Stress and facilitating the genetic improvement of cultivated poplars for saline soils.
Journal ArticleDOI
Camelid genomes reveal evolution and adaptation to desert environments
Huiguang Wu,Xuanmin Guang,Mohamed B. Al-Fageeh,Junwei Cao,Shengkai Pan,Huanmin Zhou,Li Zhang,Mohammed H. Abutarboush,Yanping Xing,Zhiyuan Xie,Ali S. Alshanqeeti,Yanru Zhang,Qiulin Yao,Badr M. Al-Shomrani,Dong Zhang,Jiang Li,Manee M. Manee,Zili Yang,Linfeng Yang,Yiyi Liu,Jilin Zhang,Musaad A. Altammami,Shenyuan Wang,Lili Yu,Wenbin Zhang,Sanyang Liu,La Ba,Chunxia Liu,Xukui Yang,Fanhua Meng,Shaowei Wang,Li Lu,Erli Li,Xueqiong Li,Kaifeng Wu,Shu Zhang,Junyi Wang,Ye Yin,Huanming Yang,Abdulaziz M. Al-Swailem,Jun Wang +40 more
TL;DR: This analysis reveals the demographic history of these species since the Tortonian Stage of the Miocene and uncovers a striking correlation between large fluctuations in population size and geological time boundaries.
Journal ArticleDOI
Molecular Signatures of Major Depression
Na Cai,Simon Chang,Yihan Li,Qiban Li,Jingchu Hu,Jieqin Liang,Li Song,Warren W. Kretzschmar,Xiangchao Gan,Jérôme Nicod,Margarita Rivera,Margarita Rivera,Margarita Rivera,Hong Deng,Bo Du,Keqing Li,Wenhu Sang,Jingfang Gao,Shugui Gao,Baowei Ha,Hung-Yao Ho,Chunmei Hu,Jian Hu,Zhenfei Hu,Guoping Huang,Guoqing Jiang,Tao Jiang,Wei Jin,Gongying Li,Kan Li,Yi Li,Yingrui Li,Youhui Li,Yu-Ting Lin,Lanfen Liu,Tiebang Liu,Liu Ying,Yuan Liu,Yao Lu,L Lv,Huaqing Meng,Puyi Qian,Hong Sang,Jianhua Shen,Jianguo Shi,Sun Jing,Ming Tao,Gang Wang,Guangbiao Wang,Jian Wang,Linmao Wang,Xueyi Wang,Xumei Wang,Huanming Yang,Lijun Yang,Ye Yin,Jinbei Zhang,Kerang Zhang,Ning Sun,Wei Zhang,Xiuqing Zhang,Zhen Zhang,Hui Zhong,Gerome Breen,Gerome Breen,Jun Wang,Jonathan Marchini,Jonathan Marchini,Yiping Chen,Qi Xu,Xun Xu,Richard Mott,Guo-Jen Huang,Kenneth S. Kendler,Jonathan Flint,Jonathan Flint +75 more
TL;DR: It is demonstrated that changes in the amount of mtDNA and telomere length are consequences of stress and entering a depressed state and have important implications for understanding how stress causes the disease.