San Diego State University

About: San Diego State University is a education organization based out in San Diego, California, United States. It is known for research contribution in the topics: Population & Poison control. The organization has 12418 authors who have published 27950 publications receiving 1192375 citations. The organization is also known as: SDSU & San Diego State College.

Phylogenetic classification of short environmental DNA fragments

Abstract: Metagenomics is providing striking insights into the ecology of microbial communities. The recently developed massively parallel 454 pyrosequencing technique gives the opportunity to rapidly obtain metagenomic sequences at a low cost and without cloning bias. However, the phylogenetic analysis of the short reads produced represents a significant computational challenge. The phylogenetic algorithm CARMA for predicting the source organisms of environmental 454 reads is described. The algorithm searches for conserved Pfam domain and protein families in the unassembled reads of a sample. These gene fragments (environmental gene tags, EGTs), are classified into a higher-order taxonomy based on the reconstruction of a phylogenetic tree of each matching Pfam family. The method exhibits high accuracy for a wide range of taxonomic groups, and EGTs as short as 27 amino acids can be phylogenetically classified up to the rank of genus. The algorithm was applied in a comparative study of three aquatic microbial samples obtained by 454 pyrosequencing. Profound differences in the taxonomic composition of these samples could be clearly revealed.

Cultural suppression of female sexuality.

Abstract: Four theories about cultural suppression of female sexuality are evaluated. Data are reviewed on cross-cultural differences in power and sex ratios, reactions to the sexual revolution, direct restraining influences on adolescent and adult female sexuality, double standard patterns of sexual morality, female genital surgery, legal and religious restrictions on sex, prostitution and pornography, and sexual deception. The view that men suppress female sexuality received hardly any support and is flatly contradicted by some findings. Instead, the evidence favors the view that women have worked to stifle each other's sexuality because sex is a limited resource that women use to negotiate with men, and scarcity gives women an advantage.

Student Activity Levels, Lesson Context, and Teacher Behavior during Middle School Physical Education

Abstract: There is little research on students' engagement in physical activity in middle school physical education (PE). We observed student activity, lesson context, and teacher behavior in 430 PE lessons taught by 126 teachers in 24 schools. Variables were analyzed by mixed-model nested analyses of covariance. Boys were more active than girls overall and during skill drills, game play, and free play. Student activity varied by lesson context, with fitness activities producing the most activity. Class size was negatively associated with student activity. Daily PE contributed a weekly total of 25 min of vigorous activity and 83 min of moderate-to-vigorous activity—much less than national objectives. Results suggest that numerous opportunities exist for increasing student physical activity during middle school PE.

Role of apoptosis in cardiovascular disease.

Abstract: Apoptosis plays a key role in the pathogenesis in a variety of cardiovascular diseases due to loss of terminally differentiated cardiac myocytes. Cardiac myocytes undergoing apoptosis have been identified in tissue samples from patients suffering from myocardial infarction, diabetic cardiomyopathy, and end-stage congestive heart failure. Apoptosis is a highly regulated program of cell death and can be mediated by death receptors in the plasma membrane, as well as the mitochondria and the endoplasmic reticulum. The cell death program is activated in cardiac myocytes by various stressors including cytokines, increased oxidative stress and DNA damage. Many studies have demonstrated that inhibition of apoptosis is cardioprotective and can prevent the development of heart failure. This review provides a current overview of the evidence of apoptosis in cardiovascular diseases and discusses the molecular pathways involved in cardiac myocyte apoptosis.

Influence of oxygen content on the structural, magnetotransport, and magnetic properties of LaMnO 3 + δ

Abstract: A systematic study of the effect of oxygen content on the structural, magnetotransport, and magnetic properties has been undertaken on a series of ${\mathrm{LaMnO}}_{3+\mathrm{\ensuremath{\delta}}}$ samples, with $\ensuremath{\delta}=0,$ 0.025, 0.07, 0.1, and 0.15. Measurements of the ac initial magnetic susceptibility, magnetization, magnetoresistance, and neutron diffraction, including small-angle neutron scattering (SANS), were performed in the temperature range 1--320 K using high magnetic fields up to 12 T. The antiferromagnetic order found in ${\mathrm{LaMnO}}_{3}$ evolves towards a ferromagnetic order as \ensuremath{\delta} increases. This behavior is accompanied by a drastic reduction of the static Jahn-Teller distortion of the ${\mathrm{MnO}}_{6}$ octahedra. The ferromagnetic coupling weakens for $\ensuremath{\delta}g~0.1.$ The magnetic behavior is interpreted by taking into account two effects caused by the increase in \ensuremath{\delta}: cation vacancies and ${\mathrm{Mn}}^{4+}{/\mathrm{M}\mathrm{n}}^{3+}$ ratio enhancement. The orthorhombic crystallographic structure becomes unstable at room temperature for $\ensuremath{\delta}g~0.1.$ The sample $\ensuremath{\delta}=0.1$ shows a structural transition from rhombohedral to orthorhombic below ${T}_{S}\ensuremath{\approx}300\mathrm{K}$ with a huge change in the cell volume. All the studied compounds were found to be insulating at low temperatures with no appreciable magnetoresistance, except for $\ensuremath{\delta}=0.15,$ in which we observed a large value for the magnetoresistance. The SANS results indicate that magnetic clustering effects are important below ${T}_{C}$ for $\ensuremath{\delta}g~0.07,$ which could explain the intriguing ferromagnetic insulator state. In the $\ensuremath{\delta}=0.07$ and $\ensuremath{\delta}=0.10$ samples we found at temperatures below ${T}_{C}$ magnetic and structural anomalies that are characteristic of charge ordering.