Showing papers by "Woods Hole Oceanographic Institution published in 2004"
Queen's University Belfast1, Aix-Marseille University2, Historic England3, University of Arizona4, Woods Hole Oceanographic Institution5, University of Sheffield6, University of Minnesota7, Columbia University8, University of California, Irvine9, University of Waikato10, University of Reading11, University of Oxford12, University of California, Santa Cruz13, University of Washington14, University of Texas at Austin15, Lawrence Livermore National Laboratory16
TL;DR: In this paper, a new calibration curve for the conversion of radiocarbon ages to calibrated (cal) ages has been constructed and internationally ratified to replace IntCal98, which extended from 0-24 cal kyr BP (Before Present, 0 cal BP = AD 1950).
Abstract: A new calibration curve for the conversion of radiocarbon ages to calibrated (cal) ages has been constructed and internationally ratified to replace IntCal98, which extended from 0-24 cal kyr BP (Before Present, 0 cal BP = AD 1950). The new calibration data set for terrestrial samples extends from 0-26 cal kyr BP, but with much higher resolution beyond 11.4 cal kyr BP than IntCal98. Dendrochronologically-dated tree-ring samples cover the period from 0-12.4 cal kyr BP. Beyond the end of the tree rings, data from marine records (corals and foraminifera) are converted to the atmospheric equivalent with a site-specific marine reservoir correction to provide terrestrial calibration from 12.4-26.0 cal kyr BP. A substantial enhancement relative to IntCal98 is the introduction of a coherent statistical approach based on a random walk model, which takes into account the uncertainty in both the calendar age and the 14C age to calculate the underlying calibration curve (Buck and Blackwell, this issue). The tree-ring data sets, sources of uncertainty, and regional offsets are discussed here. The marine data sets and calibration curve for marine samples from the surface mixed layer (Marine04) are discussed in brief, but details are presented in Hughen et al. (this issue a). We do not make a recommendation for calibration beyond 26 cal kyr BP at this time; however, potential calibration data sets are compared in another paper (van der Plicht et al., this issue).
3,737 citations
University of Washington1, University of Wisconsin–Milwaukee2, École Normale Supérieure3, University of British Columbia4, University of Wisconsin-Madison5, Princeton University6, Martek Biosciences Corporation7, University of California, Santa Barbara8, University of Melbourne9, University of California, San Diego10, Sandia National Laboratories11, University of California, Santa Cruz12, University of Regensburg13, Oak Ridge National Laboratory14, University of Hull15, Joint Genome Institute16, Academy of Sciences of the Czech Republic17, University of Massachusetts Medical School18, Woods Hole Oceanographic Institution19, Alfred Wegener Institute for Polar and Marine Research20, San Francisco State University21, University of California, Berkeley22
TL;DR: The 34 million-base-pair draft nuclear genome of the marine diatom Thalassiosira pseudonana and its 129 thousand-base pair plastid and 44 thousand base-pair mitochondrial genomes were reported in this article.
Abstract: Diatoms are unicellular algae with plastids acquired by secondary endosymbiosis. They are responsible for approximately 20% of global carbon fixation. We report the 34 million-base pair draft nuclear genome of the marine diatom Thalassiosira pseudonana and its 129 thousand-base pair plastid and 44 thousand-base pair mitochondrial genomes. Sequence and optical restriction mapping revealed 24 diploid nuclear chromosomes. We identified novel genes for silicic acid transport and formation of silica-based cell walls, high-affinity iron uptake, biosynthetic enzymes for several types of polyunsaturated fatty acids, use of a range of nitrogenous compounds, and a complete urea cycle, all attributes that allow diatoms to prosper in aquatic environments.
1,945 citations
TL;DR: It is found that the meridional overturning was nearly, or completely, eliminated during the coldest deglacial interval in the North Atlantic region, beginning with the catastrophic iceberg discharge Heinrich event H1, 17,500’yr ago, and declined sharply but briefly into the Younger Dryas cold event, about 12,700 yr ago.
Abstract: The Atlantic meridional overturning circulation is widely believed to affect climate. Changes in ocean circulation have been inferred from records of the deep water chemical composition derived from sedimentary nutrient proxies1, but their impact on climate is difficult to assess because such reconstructions provide insufficient constraints on the rate of overturning2. Here we report measurements of 231Pa/230Th, a kinematic proxy for the meridional overturning circulation, in a sediment core from the subtropical North Atlantic Ocean. We find that the meridional overturning was nearly, or completely, eliminated during the coldest deglacial interval in the North Atlantic region, beginning with the catastrophic iceberg discharge Heinrich event H1, 17,500 yr ago, and declined sharply but briefly into the Younger Dryas cold event, about 12,700 yr ago. Following these cold events, the 231Pa/230Th record indicates that rapid accelerations of the meridional overturning circulation were concurrent with the two strongest regional warming events during deglaciation. These results confirm the significance of variations in the rate of the Atlantic meridional overturning circulation for abrupt climate changes.
1,875 citations
Woods Hole Oceanographic Institution1, Queen's University Belfast2, Aix-Marseille University3, University of Arizona4, University of Sheffield5, Columbia University6, University of Hohenheim7, University of California, Santa Cruz8, Lawrence Livermore National Laboratory9, University of Toronto10, University of Reading11, University of California, Irvine12, University of Washington13, University of Texas at Austin14
TL;DR: In this paper, a new radiocarbon calibration curve, IntCal04 and Marine04, has been constructed and internationally rati- fied to replace the terrestrial and marine components of IntCal98.
Abstract: New radiocarbon calibration curves, IntCal04 and Marine04, have been constructed and internationally rati- fied to replace the terrestrial and marine components of IntCal98. The new calibration data sets extend an additional 2000 yr, from 0-26 cal kyr BP (Before Present, 0 cal BP = AD 1950), and provide much higher resolution, greater precision, and more detailed structure than IntCal98. For the Marine04 curve, dendrochronologically-dated tree-ring samples, converted with a box diffusion model to marine mixed-layer ages, cover the period from 0-10.5 cal kyr BP. Beyond 10.5 cal kyr BP, high-res- olution marine data become available from foraminifera in varved sediments and U/Th-dated corals. The marine records are corrected with site-specific 14C reservoir age information to provide a single global marine mixed-layer calibration from 10.5-26.0 cal kyr BP. A substantial enhancement relative to IntCal98 is the introduction of a random walk model, which takes into account the uncertainty in both the calendar age and the 14C age to calculate the underlying calibration curve (Buck and Blackwell, this issue). The marine data sets and calibration curve for marine samples from the surface mixed layer (Marine04) are discussed here. The tree-ring data sets, sources of uncertainty, and regional offsets are presented in detail in a companion paper by Reimer et al. (this issue). ABSTRACT. New radiocarbon calibration curves, IntCal04 and Marine04, have been constructed and internationally rati- fied to replace the terrestrial and marine components of IntCal98. The new calibration data sets extend an additional 2000 yr, from 0-26 cal kyr BP (Before Present, 0 cal BP = AD 1950), and provide much higher resolution, greater precision, and more detailed structure than IntCal98. For the Marine04 curve, dendrochronologically-dated tree-ring samples, converted with a box diffusion model to marine mixed-layer ages, cover the period from 0-10.5 cal kyr BP. Beyond 10.5 cal kyr BP, high-res- olution marine data become available from foraminifera in varved sediments and U/Th-dated corals. The marine records are corrected with site-specific 14C reservoir age information to provide a single global marine mixed-layer calibration from 10.5-26.0 cal kyr BP. A substantial enhancement relative to IntCal98 is the introduction of a random walk model, which takes into account the uncertainty in both the calendar age and the 14C age to calculate the underlying calibration curve (Buck and Blackwell, this issue). The marine data sets and calibration curve for marine samples from the surface mixed layer (Marine04) are discussed here. The tree-ring data sets, sources of uncertainty, and regional offsets are presented in detail in a companion paper by Reimer et al. (this issue).
1,205 citations
Princeton University1, Duke University2, Centre national de la recherche scientifique3, Woods Hole Oceanographic Institution4, Commonwealth Scientific and Industrial Research Organisation5, National Center for Atmospheric Research6, Hobart Corporation7, Max Planck Society8, Saint Petersburg State University9, Hadley Centre for Climate Prediction and Research10, Geophysical Fluid Dynamics Laboratory11
TL;DR: In this article, the authors examined six coupled climate model simulations to determine the ocean biological response to climate warming between the beginning of the industrial revolution and 2050, and found that global warming leads to a contraction of the highly productive marginal sea ice biome by 42% in the Northern Hemisphere and 17% in Southern Hemisphere, and leads to an expansion of the low productivity permanently stratified subtropical gyre biome by 4.0% in both hemispheres.
Abstract: [1] We examine six different coupled climate model simulations to determine the ocean biological response to climate warming between the beginning of the industrial revolution and 2050. We use vertical velocity, maximum winter mixed layer depth, and sea ice cover to define six biomes. Climate warming leads to a contraction of the highly productive marginal sea ice biome by 42% in the Northern Hemisphere and 17% in the Southern Hemisphere, and leads to an expansion of the low productivity permanently stratified subtropical gyre biome by 4.0% in the Northern Hemisphere and 9.4% in the Southern Hemisphere. In between these, the subpolar gyre biome expands by 16% in the Northern Hemisphere and 7% in the Southern Hemisphere, and the seasonally stratified subtropical gyre contracts by 11% in both hemispheres. The low-latitude (mostly coastal) upwelling biome area changes only modestly. Vertical stratification increases, which would be expected to decrease nutrient supply everywhere, but increase the growing season length in high latitudes. We use satellite ocean color and climatological observations to develop an empirical model for predicting chlorophyll from the physical properties of the global warming simulations. Four features stand out in the response to global warming: (1) a drop in chlorophyll in the North Pacific due primarily to retreat of the marginal sea ice biome, (2) a tendency toward an increase in chlorophyll in the North Atlantic due to a complex combination of factors, (3) an increase in chlorophyll in the Southern Ocean due primarily to the retreat of and changes at the northern boundary of the marginal sea ice zone, and (4) a tendency toward a decrease in chlorophyll adjacent to the Antarctic continent due primarily to freshening within the marginal sea ice zone. We use three different primary production algorithms to estimate the response of primary production to climate warming based on our estimated chlorophyll concentrations. The three algorithms give a global increase in primary production of 0.7% at the low end to 8.1% at the high end, with very large regional differences. The main cause of both the response to warming and the variation between algorithms is the temperature sensitivity of the primary production algorithms. We also show results for the period between the industrial revolution and 2050 and 2090.
847 citations
TL;DR: In this paper, the mass flux through convergent plate margins is documented to the understanding of petrogenesis in arc settings and to the origin of the continental crust, since subduction zones are the only major routes by which material extracted from the mantle can be returned to great depths within the Earth.
Abstract: [1] Documenting the mass flux through convergent plate margins is important to the understanding of petrogenesis in arc settings and to the origin of the continental crust, since subduction zones are the only major routes by which material extracted from the mantle can be returned to great depths within the Earth. Despite their significance, there has been a tendency to view subduction zones as areas of net crustal growth. Convergent plate margins are divided into those showing long-term landward retreat of the trench and those dominated by accretion of sediments from the subducting plate. Tectonic erosion is favored in regions where convergence rates exceed 6 ± 0.1 cm yr−1 and where the sedimentary cover is 1 km. Large volumes of continental crust are subducted at both erosive and accretionary margins. Average magmatic productivity of arcs must exceed 90 km3 m.y.−1 if the volume of the continental crust is to be maintained. Convergence rate rather than height of the melting column under the arc appears to be the primary control on long-term melt production. Oceanic arcs will not be stable if crustal thicknesses exceed 36 km or trench retreat rates are >6 km m.y.−1. Continental arcs undergoing erosion are major sinks of continental crust. This loss requires that oceanic arcs be accreted to the continental margins if the net volume of crust is to be maintained.
785 citations
TL;DR: In this article, the authors argue that key features of thrust earthquake triggering, inhibition, and clustering can be explained by Coulomb stress changes, which illustrate by a suite of representative models and by detailed examples.
Abstract: [1] We argue that key features of thrust earthquake triggering, inhibition, and clustering can be explained by Coulomb stress changes, which we illustrate by a suite of representative models and by detailed examples. Whereas slip on surface-cutting thrust faults drops the stress in most of the adjacent crust, slip on blind thrust faults increases the stress on some nearby zones, particularly above the source fault. Blind thrusts can thus trigger slip on secondary faults at shallow depth and typically produce broadly distributed aftershocks. Short thrust ruptures are particularly efficient at triggering earthquakes of similar size on adjacent thrust faults. We calculate that during a progressive thrust sequence in central California the 1983 Mw = 6.7 Coalinga earthquake brought the subsequent 1983 Mw = 6.0 Nunez and 1985 Mw = 6.0 Kettleman Hills ruptures 10 bars and 1 bar closer to Coulomb failure. The idealized stress change calculations also reconcile the distribution of seismicity accompanying large subduction events, in agreement with findings of prior investigations. Subduction zone ruptures are calculated to promote normal faulting events in the outer rise and to promote thrust-faulting events on the periphery of the seismic rupture and its downdip extension. These features are evident in aftershocks of the 1957 Mw = 9.1 Aleutian and other large subduction earthquakes. We further examine stress changes on the rupture surface imparted by the 1960 Mw = 9.5 and 1995 Mw = 8.1 Chile earthquakes, for which detailed slip models are available. Calculated Coulomb stress increases of 2–20 bars correspond closely to sites of aftershocks and postseismic slip, whereas aftershocks are absent where the stress drops by more than 10 bars. We also argue that slip on major strike-slip systems modulates the stress acting on nearby thrust and strike-slip faults. We calculate that the 1857 Mw = 7.9 Fort Tejon earthquake on the San Andreas fault and subsequent interseismic slip brought the Coalinga fault ∼1 bar closer to failure but inhibited failure elsewhere on the Coast Ranges thrust faults. The 1857 earthquake also promoted failure on the White Wolf reverse fault by 8 bars, which ruptured in the 1952 Mw = 7.3 Kern County shock but inhibited slip on the left-lateral Garlock fault, which has not ruptured since 1857. We thus contend that stress transfer exerts a control on the seismicity of thrust faults across a broad spectrum of spatial and temporal scales.
755 citations
TL;DR: In this article, a global three-dimensional marine ecosystem model with several key phytoplankton functional groups, multiple limiting nutrients, explicit iron cycling, and a mineral ballast/organic matter parameterization is run within a global ocean circulation model.
Abstract: [1] A global three-dimensional marine ecosystem model with several key phytoplankton functional groups, multiple limiting nutrients, explicit iron cycling, and a mineral ballast/organic matter parameterization is run within a global ocean circulation model. The coupled biogeochemistry/ecosystem/circulation (BEC) model reproduces known basin-scale patterns of primary and export production, biogenic silica production, calcification, chlorophyll, macronutrient and dissolved iron concentrations. The model captures observed high nitrate, low chlorophyll (HNLC) conditions in the Southern Ocean, subarctic and equatorial Pacific. Spatial distributions of nitrogen fixation are in general agreement with field data, with total N-fixation of 55 Tg N. Diazotrophs directly account for a small fraction of primary production (0.5%) but indirectly support 10% of primary production and 8% of sinking particulate organic carbon (POC) export. Diatoms disproportionately contribute to export of POC out of surface waters, but CaCO3 from the coccolithophores is the key driver of POC flux to the deep ocean in the model. An iron source from shallow ocean sediments is found critical in preventing iron limitation in shelf regions, most notably in the Arctic Ocean, but has a relatively localized impact. In contrast, global-scale primary production, export production, and nitrogen fixation are all sensitive to variations in atmospheric mineral dust inputs. The residence time for dissolved iron in the upper ocean is estimated to be a few years to a decade. Most of the iron utilized by phytoplankton is from subsurface sources supplied by mixing, entrainment, and ocean circulation. However, owing to the short residence time of iron in the upper ocean, this subsurface iron pool is critically dependent on continual replenishment from atmospheric dust deposition and, to a lesser extent, lateral transport from shelf regions.
742 citations
Moss Landing Marine Laboratories1, Monterey Bay Aquarium Research Institute2, Woods Hole Oceanographic Institution3, Duke University4, University of California, Santa Barbara5, San Francisco State University6, University of Miami7, Rutgers University8, College of William & Mary9, National Oceanic and Atmospheric Administration10, University of California, Santa Cruz11, University of Massachusetts Dartmouth12, Oregon State University13, Columbia University14, University of California, San Diego15, California State University16, Stony Brook University17, Massachusetts Institute of Technology18
TL;DR: Two mesoscale experiments, designed to investigate the effects of iron enrichment in regions with high and low concentrations of silicic acid, were performed in the Southern Ocean, demonstrating iron's pivotal role in controlling carbon uptake and regulating atmospheric partial pressure of carbon dioxide.
Abstract: The availability of iron is known to exert a controlling influence on biological productivity in surface waters over large areas of the ocean and may have been an important factor in the variation of the concentration of atmospheric carbon dioxide over glacial cycles. The effect of iron in the Southern Ocean is particularly important because of its large area and abundant nitrate, yet iron-enhanced growth of phytoplankton may be differentially expressed between waters with high silicic acid in the south and low silicic acid in the north, where diatom growth may be limited by both silicic acid and iron. Two mesoscale experiments, designed to investigate the effects of iron enrichment in regions with high and low concentrations of silicic acid, were performed in the Southern Ocean. These experiments demonstrate iron's pivotal role in controlling carbon uptake and regulating atmospheric partial pressure of carbon dioxide.
615 citations
California Institute of Technology1, Goddard Space Flight Center2, University of Bremen3, National Institute of Water and Atmospheric Research4, Woods Hole Oceanographic Institution5, University of California, Berkeley6, Harvard University7, Haverford College8, Commonwealth Scientific and Industrial Research Organisation9, Colorado State University10, Climate Monitoring and Diagnostics Laboratory11, Goodrich Corporation12
TL;DR: The Orbiting Carbon Observatory (OCO) as mentioned in this paper is the first global, space-based measurements of atmospheric carbon dioxide (CO 2 ) with the precision, resolution and coverage needed to characterize CO 2 sources and sinks on regional scales.
539 citations
TL;DR: Results are reported from analyses of IPLs in pure cultures of biogeochemically relevant prokaryotes and marine sediments by high-performance liquid chromatography/electrospray ionization ion-trap mass spectrometry (HPLC/ESI-IT-MSn) and analytical protocols are presented to decipher structural information from mass spectral data.
Abstract: Lipids from prokaryotic cell membranes can serve as sources of information on the biogeochemistry and microbial ecology of natural ecosystems. Traditionally, apolar derivatives of the intact polar membrane molecules, e.g., fatty acids, have been the major target of lipid-based biogeochemical studies. However, when still intact, i.e., as glycerol esters and ethers with attached polar headgroups, membrane lipids are diagnostic for living prokaryotes, which makes them excellent biomarkers for the study of in situ microbial processes in geological systems such as sediments or soils. Intact polar lipids (IPLs) are attractive analytical targets because they are taxonomically more specific than their apolar derivatives and avoid exclusion of signals from prokaryotes that primarily build their membranes with ether-bound lipids such as archaea and some bacteria. Here we report results from analyses of IPLs in pure cultures of biogeochemically relevant prokaryotes and marine sediments by high-performance liquid chromatography/electrospray ionization ion-trap mass spectrometry (HPLC/ESI-IT-MSn). This technique is suitable for screening of biomass and environmental samples for distinctive taxonomic structural features such as distribution of polar lipid headgroups, types of bonds between alkyl moiety and glycerol backbone, and the chain length and degree of unsaturation in the alkyl moieties. We present analytical protocols to decipher structural information from mass spectral data. The IPL contents in selected archaeal and bacterial species are diverse and qualify as molecular fingerprints. Applied to marine sediments, the approach provided detailed information on the dominant microbial groups. The IPLs from bacterial members of anaerobic methanotrophic communities in surface sediments at Hydrate Ridge resemble those found in Desulfosarcina variabilis. The presence of dietherglycerophospholipids, however, suggests the presence of other bacteria possibly affiliated with the deepest phylogenetic branches in the tree of life. Sediments from approximately 90 m below the seafloor on the Peruvian continental margin are dominated by intact archaeal tetraethers with glycosidically bound hexoses as headgroups, consistent with a significant fraction of the community being archaea. Additional calditol-based tetraethers imply that the sedimentary archaea are taxonomically linked to the crenarchaeal Sulfolobales.
TL;DR: In this article, a global tidal model is used to compute turbulent energy levels associated with the dissipation of internal tides, and the diapycnal mixing supported by this energy flux is computed using a simple parameterization.
01 Dec 2004
TL;DR: The response of the ocean redox state to the rise of atmospheric oxygen about 2.3 billion years ago (Ga) is a matter of controversy as discussed by the authors, and the authors of this paper provide iron isotope evidence that the change in the ocean iron cycle occurred at the same time as the change of the atmospheric redox states.
Abstract: The response of the ocean redox state to the rise of atmospheric oxygen about 2.3 billion years ago (Ga) is a matter of controversy. Here we provide iron isotope evidence that the change in the ocean iron cycle occurred at the same time as the change in the atmospheric redox state. Variable and negative iron isotope values in pyrites older than about 2.3 Ga suggest that an iron-rich global ocean was strongly affected by the deposition of iron oxides. Between 2.3 and 1.8 Ga, positive iron isotope values of pyrite likely reflect an increase in the precipitation of iron sulfides relative to iron oxides in a redox stratified ocean.
TL;DR: An in-depth analysis of the EMII-defining Samoan hot spot lavas leads to a new working hypothesis for the origin of this high 87Sr/86Sr mantle end-member as discussed by the authors.
Abstract: An in-depth Sr-Nd-Pb-He-Os isotope and trace element study of the EMII-defining Samoan hot spot lavas leads to a new working hypothesis for the origin of this high 87Sr/86Sr mantle end-member. Systematics of the Samoan fingerprint include (1) increasing 206Pb/204Pb with time - from 18.6 at the older, western volcanoes to 19.4 at the present-day hot spot center, Vailulu'u Seamount, (2) en-echelon arrays in 206Pb/204Pb – 208Pb/204Pb space which correspond to the two topographic lineaments of the 375 km long volcanic chain – this is much like the Kea and Loa Trends in Hawai'i, (3) the highest 87Sr/86Sr (0.7089) of all oceanic basalts, (4) an asymptotic decrease in 3He/4He from 24 RA [Farley et al., 1992] to the MORB value of 8 RA with increasing 87Sr/86Sr, and (5) mixing among four components which are best described as the “enriched mantle”, the depleted FOZO mantle, the (even more depleted) MORB Mantle, and a mild HIMU (high 238U/204Pb) mantle component. A theoretical, “pure” EMII lava composition has been calculated and indicates an extremely smooth trace element pattern of this end-member mantle reservoir. The standard recycling model (of ocean crust/sediment) fails as an explanation for producing Samoan EM2, due to these smooth spidergrams for EM2 lavas, low 187Os/188Os ratios and high 3He/4He (>8 RA). Instead, the origin of EM2 has been modeled with the ancient formation of metasomatised oceanic lithosphere, followed by storage in the deep mantle and return to the surface in the Samoan plume.
TL;DR: Beaked whales (Cetacea: Ziphiidea) of the genera Ziphius and Mesoplodon are so difficult to study that they are mostly known from strandings.
Abstract: Beaked whales (Cetacea: Ziphiidea) of the genera Ziphius and Mesoplodon are so difficult to study that they are mostly known from strandings. How these elusive toothed whales use and react to sound...
TL;DR: This chapter reviews the current knowledge of gene regulation and transcription in dinoflagellates with regard to the unique aspects of the nuclear genome and the implications for understanding organellar genome evolution are discussed.
Abstract: In this paper, we focus on dinoflagellate ecology, toxin production, fossil record, and a molecular phylogenetic analysis of hosts and plastids. Of ecological interest are the swimming and feeding behavior, bioluminescence, and symbioses of dinoflagellates with corals. The many varieties of dinoflagellate toxins, their biological effects, and current knowledge of their origin are discussed. Knowledge of dinoflagellate evolution is aided by a rich fossil record that can be used to document their emergence and diversification. However, recent biogeochemical studies indicate that dinoflagellates may be much older than previously believed. A remarkable feature of dinoflagellates is their unique genome structure and gene regulation. The nuclear genomes of these algae are of enormous size, lack nucleosomes, and have permanently condensed chromosomes. This chapter reviews the current knowledge of gene regulation and transcription in dinoflagellates with regard to the unique aspects of the nuclear genome. Previous work shows the plastid genome of typical dinoflagellates to have been reduced to single-gene minicircles that encode only a small number of proteins. Recent studies have demonstrated that the majority of the plastid genome has been transferred to the nucleus, which makes the dinoflagellates the only eukaryotes to encode the majority of typical plastid genes in the nucleus. The evolution of the dinoflagellate plastid and the implications of these results for understanding organellar genome evolution are discussed.
TL;DR: The geology of the Darien province of eastern Panama is presented through a new geologic map and detailed biostratigraphic and paleobathymetric analysis of its Upper Cretaceous to upper Miocene sediments as discussed by the authors.
Abstract: The geology of the Darien province of eastern Panama is presented through a new geologic map and detailed biostratigraphic and paleobathymetric analysis of its Upper Cretaceous to upper Miocene sediments. The sequence of events inferred from the stratigraphic record includes the collision of the Panama arc (the southwestern margin of the Caribbean plate) and South American continent. Three tectonostratigraphic units underlie the Darien region: (1) Precollisional Upper Cretaceous–Eocene crystalline basement rocks of the San Blas Complex form a series of structurally complex topographic massifs along the northeastern and southwestern margins of the Darien province. These rocks formed part of a >20 m.y. submarine volcanic arc developed in a Pacific setting distant from the continental margin of northwestern South America. The northerly basement rocks are quartz diorites, granodiorites, and basaltic andesites, through dacites to rhyolites, indicating the presence of a magmatic arc. The southerly basement rocks are an accreted suite of diabase, pillow basalt, and radiolarian chert deposited at abyssal depths. Precollisional arc-related rocks, of Eocene to lower Miocene age, consist of 4000 m of pillow basalts and volcaniclastics, and biogenic calcareous and siliceous deep-water sediments. They consist of the Eocene-Oligocene Darien Formation, the Oligocene Porcona Formation and the lower-middle Miocene Clarita Formation. Postcollisional deposits are mostly coarse- to fine-grained siliciclastic sedimentary rocks and turbiditic sandstone of upper middle to latest Miocene age. This 3000 m thick sedimentary sequence is deformed as part of a complexly folded and faulted synclinorium that forms the central Chucunaque-Tuira Basin of the Darien. The sedimentary package reveals general shallowing of the basin from bathyal to inner neritic depths during the 12.8−7.1 Ma collision of the Panama arc with South America. The sediments are divided into the upper middle Miocene Tapaliza Formation, the lower upper Miocene Tuira and Membrillo Formations, the middle upper Miocene Yaviza Formation, and the middle to upper Miocene Chucunaque Formation.
The precollisional open marine units of Late Cretaceous–middle Miocene age are separated from the overlying postcollisional sequence of middle to late Miocene age by a regional unconformity at 14.8−12.8 Ma. This unconformity marks the disappearance of radiolarians, the changeover of predominantly silica deposition from the Atlantic to the Pacific, the initiation of the uplift of the isthmus of Panama, and the onset of shallowing upward, coarser clastic deposition. This pattern is also recorded from the southern Limon Basin of Caribbean Costa Rica to the Atrato Basin of northwestern Colombia. By the middle late Miocene, neritic depths were widespread throughout the Darien region, and a regional unconformity suggests completion of the Central American arc collision with South America by 7.1 Ma. No Pliocene deposits are recorded from either the Darien or the Panama Canal Basin, and no sediments younger than 4.8 Ma have been identified in the Atrato Basin of Colombia, suggesting rapid uplift and extensive emergence of the Central American isthmus in the latest Miocene.
Northward movement of the eastern segment of the Panama arc along a now quiescent Panama Canal Zone fault during Eocene-Oligocene time may have dislocated the pre-collision arc. Since collision, the portion west of this fault (Chorotega Block) has remained stable, without rotation; to the east, in the Darien region, compression has been accommodated through formation of a Panama microplate with convergent boundaries to the north (North Panama deformed belt) and south (South Panama deformed belt), and suturing with South America along the Atrato Valley. Deformation within the microplate has been accommodated in the Darien province by several major left-lateral strike-slip faults that were active until the early Pliocene, since when the plate has behaved rigidly.
Princeton University1, Centre national de la recherche scientifique2, National Oceanic and Atmospheric Administration3, Lawrence Livermore National Laboratory4, University of Liège5, Woods Hole Oceanographic Institution6, Remote Sensing Center7, Massachusetts Institute of Technology8, Geophysical Fluid Dynamics Laboratory9, University of California, Los Angeles10, University of Bern11, National Center for Atmospheric Research12, Max Planck Society13, Hobart Corporation14, Pennsylvania State University15, Alfred Wegener Institute for Polar and Marine Research16, Council of Scientific and Industrial Research17
TL;DR: In this paper, the authors used radiocarbon and chlorofluorocarbon-11 data from the World Ocean Circulation Experiment (WOCE) to assess a suite of 19 ocean carbon cycle models.
Abstract: New radiocarbon and chlorofluorocarbon-11 data from the World Ocean Circulation Experiment are used to assess a suite of 19 ocean carbon cycle models. We use the distributions and inventories of these tracers as quantitative metrics of model skill and find that only about a quarter of the suite is consistent with the new data-based metrics. This should serve as a warning bell to the larger community that not all is well with current generation of ocean carbon cycle models. At the same time, this highlights the danger in simply using the available models to represent the state-of-the-art modeling without considering the credibility of each model.
TL;DR: Temperature is a good predictor of the occurrence of closely related vibrios but that considerable microdiversity of unknown significance coexists within this trend, suggesting distinct warm-water and year-round populations.
Abstract: Vibrios are ubiquitous marine bacteria that have long served as models for heterotrophic processes and have received renewed attention because of the discovery of increasing numbers of facultatively pathogenic strains. Because the occurrence of specific vibrios has frequently been linked to the temperature, salinity, and nutrient status of water, we hypothesized that seasonal changes in coastal water bodies lead to distinct vibrio communities and sought to characterize their level of differentiation. A novel technique was used to quantify shifts in 16S rRNA gene abundance in samples from Barnegat Bay, N.J., collected over a 15-month period. Quantitative PCR (QPCR) with primers specific for the genus Vibrio was combined with separation and quantification of amplicons by constant denaturant capillary electrophoresis (CDCE). Vibrio populations identified by QPCR-CDCE varied between summer and winter samples, suggesting distinct warm-water and year-round populations. Identification of the CDCE populations by cloning and sequencing of 16S rRNA genes from two summer and two winter samples confirmed this distinction. It further showed that CDCE populations corresponded in most cases to approximately 98% rRNA similarity groups and suggested that the abundance of these follows temperature trends. Phylogenetic comparison yielded closely related cultured and often pathogenic representatives for most sequences, and the temperature ranges of these isolates confirmed the trends seen in the environmental samples. Overall, this suggests that temperature is a good predictor of the occurrence of closely related vibrios but that considerable microdiversity of unknown significance coexists within this trend.
Oregon State University1, Pacific Northwest National Laboratory2, University of Bremen3, United States Geological Survey4, Lamont–Doherty Earth Observatory5, Woods Hole Oceanographic Institution6, Geological Survey of Canada7, University of Texas at Austin8, University of Leicester9, Eastern Kentucky University10, Rice University11, Arizona State University12, National Taiwan University13, China University of Geosciences (Beijing)14, University of Tokyo15, University of Tromsø16, Geoscience Research Institute17, University of California, San Diego18
TL;DR: In this article, the gas hydrate stability zone (GHSZ) from the seafloor to its base was sampled during Leg 204 of the Ocean Drilling Program (ODP) to the accretionary complex of the Cascadia subduction zone.
TL;DR: A field program to measure acoustic propagation characteristics and physical oceanography was undertaken in April and May 2001 in the northern South China Sea as discussed by the authors, where 21 moorings in water of 350- to 71-m depth near the continental slope.
Abstract: A field program to measure acoustic propagation characteristics and physical oceanography was undertaken in April and May 2001 in the northern South China Sea. Fluctuating ocean properties were measured with 21 moorings in water of 350- to 71-m depth near the continental slope. The sea floor at the site is gradually sloped at depths less than 90 m, but the deeper area is steppy, having gradual slopes over large areas that are near critical for diurnal internal waves and steep steps between those areas that account for much of the depth change. Large-amplitude nonlinear internal gravity waves incident on the site from the east were observed to change amplitude, horizontal length scale, and energy when shoaling. Beginning as relatively narrow solitary waves of depression, these waves continued onto the shelf much broadened in horizontal scale, where they were trailed by numerous waves of elevation (alternatively described as oscillations) that first appeared in the continental slope region. Internal gravity waves of both diurnal and semidiurnal tidal frequencies (internal tides) were also observed to propagate into shallow water from deeper water, with the diurnal waves dominating. The internal tides were at times sufficiently nonlinear to break down into bores and groups of high-frequency nonlinear internal waves.
TL;DR: In this article, the authors proposed to normalize to the flux of 230 th scavenged from seawater, which is nearly constant and equivalent to the known rate of production of 230Th from the decay of dissolved 234U.
Abstract: There is increasing evidence indicating that syndepositional redistribution of sediment on the seafloor by bottom currents is common and can significantly affect sediment mass accumulation rates. Notwithstanding its common incidence, this process (generally referred to as sediment focusing) is often difficult to recognize. If redistribution is near synchronous to deposition, the stratigraphy of the sediment is not disturbed and sediment focusing can easily be overlooked. Ignoring it, however, can lead to serious misinterpretations of sedimentary fluxes, particularly when past changes in export flux from the overlying water are inferred. In many instances, this problem can be resolved, at least for sediments deposited during the late Quaternary, by normalizing to the flux of 230Th scavenged from seawater, which is nearly constant and equivalent to the known rate of production of 230Th from the decay of dissolved 234U. We review the principle, advantages and limitations of this method. Notwithstanding its limitations, it is clear that 230Th normalization does provide a means of achieving more accurate interpretations of sedimentary fluxes and eliminates the risk of serious misinterpretations of sediment mass accumulation rates.
TL;DR: In this paper, the results of a petrographic study of hydrothermally altered peridotites drilled during Ocean Drilling Program (ODP) Leg 209 in the 15°20′N fracture Zone area on the Mid-Atlantic Ridge (MAR) were presented.
Abstract: [1] We present first results of a petrographic study of hydrothermally altered peridotites drilled during Ocean Drilling Program (ODP) Leg 209 in the 15°20′N fracture Zone area on the Mid-Atlantic Ridge (MAR). We find that serpentinization is extensive at all drill sites. Where serpentinization is incomplete, phase relations indicate two major reaction pathways. One is reaction of pyroxene to talc and tremolite, and the other is reaction of olivine to serpentine, magnetite, and brucite. We interpret these reactions in the light of recent peridotite-seawater reaction experiments and compositions of fluids venting from peridotite massifs at a range of temperatures. We suggest that the replacement of pyroxene by talc and tremolite takes place at temperatures >350°–400°C, where olivine is stable. The breakdown of olivine to serpentine, magnetite, and brucite is favored at temperatures below 250°C, where olivine reacts faster then pyroxene. High-temperature hydrothermal fluids venting at the Logatchev and Rainbow sites are consistent with rapid reaction of pyroxene and little or no reaction of olivine. Moderate-temperature fluids venting at the Lost City site are consistent with ongoing reaction of olivine to serpentine and brucite. Many completely serpentinized peridotites lack brucite and talc because once the more rapidly reacting phase is exhausted, interaction with the residual phase will change fluid pH and silica activity such that brucite or talc react to serpentine. At two sites we see strong evidence for continued fluid flow and fluid-rock interaction after serpentinization was complete. At Site 1268, serpentinites underwent massive replacement by talc under static conditions. This reaction requires either removal of Mg from or addition of Si to the system. We propose that the talc-altered rocks are Si-metasomatized and that the source of Si is likely gabbro-seawater reaction or breakdown of pyroxene deeper in the basement. The basement at Site 1268 is heavily veined, with talc and talc-oxide-sulfide veins being the most common vein types. It appears that the systems evolved from reducing (oxygen fugacity buffered by magnetite-pyrrhotite-pyrite and lower) to oxidizing (dominantly hematite). We propose that this transition is indicative of high fluid flux under retrograde conditions and that the abundance of hematite may relate to the Ca-depleted nature of the basement that prevents near-quantitative removal of seawater sulfate by anhydrite precipitation. At site 1272 we find abundant iowaite partly replacing brucite. While this is the first report of iowaite from a mid-ocean ridge setting, its presence indicates, again, fairly oxidizing conditions. Our preliminary results indicate that peridotite-seawater and serpentinite-seawater interactions can take place under a wider range of temperature and redox conditions than previously appreciated.
TL;DR: The relationship derived between S. alterniflora and relative wastewater load to predict wastewater loads in locations lacking quantitative land use data matched well with known qualitative information, proving the use of a stable isotopic method for predicting wastewater input.
Abstract: Increased anthropogenic delivery of nutrients to water bodies, both freshwater and estuarine, has caused detrimental changes in habitat, food web structure, and nutrient cycling. Nitrogen-stable isotopes may be suitable indicators of such increased nutrient delivery. In this study, we looked at the differences in response of macrophyte delta15N values to anthropogenic N across different taxonomic groups and geographic regions to test a stable isotopic method for detecting anthropogenic impacts. Macrophyte delta15N values increased with wastewater input and water-column dissolved inorganic nitrogen (DIN) concentration. When macrophytes were divided into macroalgae and plants, they responded similarly to increases in wastewater N, although macroalgae was a more reliable indicator of both wastewater inputs and water-column DIN concentrations. Smooth cordgrass (Spartina alterniflora Loisel.) Delta15N increased uniformly with wastewater inputs across a geographic range. We used the relationship derived between S. alterniflora and relative wastewater load to predict wastewater loads in locations lacking quantitative land use data. The predictions matched well with known qualitative information, proving the use of a stable isotopic method for predicting wastewater input.
TL;DR: In this paper, the authors present a Geophysical Journal International 157 (2004): 988-1006, doi:10.1111/j.1365-246X.02203.x.
Abstract: Author Posting. © Blackwell, 2004. This article is posted here by permission of Blackwell for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 157 (2004): 988–1006, doi:10.1111/j.1365-246X.2004.02203.x.
TL;DR: The hypothesis that creaks are an echolocation signal adapted for foraging, analogous to terminal buzzes in taxonomically diverse echlocating species, strongly support the hypothesis thatcreaks are produced during prey capture.
Abstract: During foraging dives, sperm whales (Physeter macrocephalus) produce long series of regular clicks at 0.5-2 s intervals interspersed with rapid-click buzzes called "creaks". Sound, depth and orientation recording Dtags were attached to 23 whales in the Ligurian Sea and Gulf of Mexico to test whether the behaviour of diving sperm whales supports the hypothesis that creaks are produced during prey capture. Sperm whales spent most of their bottom time within one or two depth bands, apparently feeding in vertically stratified prey layers. Creak rates were highest during the bottom phase: 99.8% of creaks were produced in the deepest 50% of dives, 57% in the deepest 15% of dives. Whales swam actively during the bottom phase, producing a mean of 12.5 depth inflections per dive. A mean of 32% of creaks produced during the bottom phase occurred within 10 s of an inflection (13x more than chance). Sperm whales actively altered their body orientation throughout the bottom phase with significantly increased rates of change during creaks, reflecting increased manoeuvring. Sperm whales increased their bottom foraging time when creak rates were higher. These results all strongly support the hypothesis that creaks are an echolocation signal adapted for foraging, analogous to terminal buzzes in taxonomically diverse echolocating species.
TL;DR: In this paper, the authors identify three types of regime shifts (smooth, abrupt and discontinuous) based on the relationship between the response of an ecosystem variable and some external forcing or condition (control variable).
TL;DR: In this article, the authors examined the relationship of the stratospheric tracer O3 and the troposphere tracer CO in terms of the chemical composition of the tropopause and showed that the transition from troposphere to stratosphere is much sharper near 65°N than at 40°N.
Abstract: [1] Definitions of the extratropical tropopause are examined from the perspective of chemical composition. Fine-scale measurements of temperature, ozone, carbon monoxide, and water vapor from approximately 70 aircraft flights, with ascending and descending tropopause crossings near 40°N and 65°N, are used in this analysis. Using the relationship of the stratospheric tracer O3 and the tropospheric tracer CO, we address the issues of tropopause sharpness and where the transitions from troposphere to stratosphere occur in terms of the chemical composition. Tracer relationships indicate that mixing of stratospheric and tropospheric air masses occurs in the vicinity of the tropopause to form a transition layer. Statistically, this transition layer is centered on the thermal tropopause. Furthermore, we show that the transition is much sharper near 65°N (a region away from the subtropical jet) but spans a larger altitude range near 40°N (in the vicinity of the subtropical jet). This latter feature is consistent with enhanced stratosphere-troposphere exchange and mixing activity near the tropopause break.
TL;DR: In this article, it is suggested that elevated near-bottom mixing (Kρ ∼ 10−3 m2 s−1) observed offshore of the supercritical continental slope arises from the reflection of a remotely generated, low-mode, M2 internal tide.
Abstract: Observations of turbulence, internal waves, and subinertial flow were made over a steep, corrugated continental slope off Virginia during May–June 1998. At semidiurnal frequencies, a convergence of low-mode, onshore energy flux is approximately balanced by a divergence of high-wavenumber offshore energy flux. This conversion occurs in a region where the continental slope is nearly critical with respect to the semidiurnal tide. It is suggested that elevated near-bottom mixing (Kρ ∼ 10−3 m2 s−1) observed offshore of the supercritical continental slope arises from the reflection of a remotely generated, low-mode, M2 internal tide. Based on the observed turbulent kinetic energy dissipation rate ϵ, the high-wavenumber internal tide decays on time scales O(1 day). No evidence for internal lee wave generation by flow over the slope's corrugations or internal tide generation at the shelf break was found at this site.
TL;DR: The flux of carbon was similar in magnitude to that of natural blooms in the Southern Ocean and thus small relative to global carbon budgets and proposed geoengineering plans to sequester atmospheric carbon dioxide in the deep sea.
Abstract: An unresolved issue in ocean and climate sciences is whether changes to the surface ocean input of the micronutrient iron can alter the flux of carbon to the deep ocean. During the Southern Ocean Iron Experiment, we measured an increase in the flux of particulate carbon from the surface mixed layer, as well as changes in particle cycling below the iron-fertilized patch. The flux of carbon was similar in magnitude to that of natural blooms in the Southern Ocean and thus small relative to global carbon budgets and proposed geoengineering plans to sequester atmospheric carbon dioxide in the deep sea.