Genome sequence of the palaeopolyploid soybean
Jeremy Schmutz,Steven B. Cannon,Jessica A. Schlueter,Jessica A. Schlueter,Jianxin Ma,Therese Mitros,William Nelson,David L. Hyten,Qijian Song,Qijian Song,Jay J. Thelen,Jianlin Cheng,Dong Xu,Uffe Hellsten,Gregory D. May,Yeisoo Yu,Tetsuya Sakurai,Taishi Umezawa,Madan K. Bhattacharyya,Devinder Sandhu,Babu Valliyodan,Erika Lindquist,Myron Peto,David Grant,Shengqiang Shu,David Goodstein,Kerrie Barry,Montona Futrell-Griggs,Brian Abernathy,Jianchang Du,Zhixi Tian,Liucun Zhu,Navdeep Gill,Trupti Joshi,Marc Libault,Ananad Sethuraman,Xue-Cheng Zhang,Kazuo Shinozaki,Henry T. Nguyen,Rod A. Wing,Perry B. Cregan,James E. Specht,Jane Grimwood,Daniel S. Rokhsar,Gary Stacey,Randy C. Shoemaker,Scott A. Jackson +46 more
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TLDR
An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.Abstract:
Soybean (Glycine max) is one of the most important crop plants for seed protein and oil content, and for its capacity to fix atmospheric nitrogen through symbioses with soil-borne microorganisms. We sequenced the 1.1-gigabase genome by a whole-genome shotgun approach and integrated it with physical and high-density genetic maps to create a chromosome-scale draft sequence assembly. We predict 46,430 protein-coding genes, 70% more than Arabidopsis and similar to the poplar genome which, like soybean, is an ancient polyploid (palaeopolyploid). About 78% of the predicted genes occur in chromosome ends, which comprise less than one-half of the genome but account for nearly all of the genetic recombination. Genome duplications occurred at approximately 59 and 13 million years ago, resulting in a highly duplicated genome with nearly 75% of the genes present in multiple copies. The two duplication events were followed by gene diversification and loss, and numerous chromosome rearrangements. An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.read more
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Proteomic analysis of flooded soybean root exposed to aluminum oxide nanoparticles.
TL;DR: The results suggest that Al2O3 nanoparticles might promote the growth of soybean under flooding stress by regulating energy metabolism and cell death.
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In silico archeogenomics unveils modern plant genome organisation, regulation and evolution
TL;DR: In silico paleogenomic data have revealed the evolutionary forces that have shaped present-day genomes and allowed us to gain insight into how they are organised and regulated today.
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A comparison of sulfate and selenium accumulation in relation to the expression of sulfate transporter genes in Astragalus species.
TL;DR: High expression of sulfate transporters in certain Astragalus species may lead to enhanced Se uptake and translocation ability and therefore may contribute to the Se hyperaccumulation trait; however, it is not sufficient to explain S/Se discriminatory mechanisms.
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Genome-wide survey of the soybean GATA transcription factor gene family and expression analysis under low nitrogen stress.
Chanjuan Zhang,Yuqing Hou,Qingnan Hao,Haifeng Chen,Chen Limiao,Songli Yuan,Zhihui Shan,Zhang Xiaojuan,Zhonglu Yang,Qiu Dezhen,Xinan Zhou,Wenjun Huang +11 more
TL;DR: Results indicated that segmental duplication predominantly contributed to the expansion of the GATA factor gene family in soybean, and two GATA factors GATA44 and GATA58 were likely to be involved in the regulation of nitrogen metabolism in soy bean.
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Identification of positive yield QTL alleles from exotic soybean germplasm in two backcross populations
Ki-Seung Kim,Brian W. Diers,David L. Hyten,David L. Hyten,M. A. Rouf Mian,J. G. Shannon,Randall L. Nelson +6 more
TL;DR: To map quantitative trait loci (QTL) in two backcross populations developed using soybean plant introductions as donor parents, it is shown that exotic germplasm can be a source of new alleles that can improve soybean yield.
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