C
Carrie McCracken
Researcher at University of Maryland, Baltimore
Publications - 22
Citations - 1521
Carrie McCracken is an academic researcher from University of Maryland, Baltimore. The author has contributed to research in topics: Gene & Transcriptome. The author has an hindex of 8, co-authored 19 publications receiving 867 citations. Previous affiliations of Carrie McCracken include University of Maryland, College Park.
Papers
More filters
Journal ArticleDOI
Strains, functions and dynamics in the expanded Human Microbiome Project
Jason Lloyd-Price,Jason Lloyd-Price,Anup Mahurkar,Gholamali Rahnavard,Gholamali Rahnavard,Jonathan Crabtree,Joshua Orvis,A. Brantley Hall,Arthur Brady,Heather Huot Creasy,Carrie McCracken,Michelle G. Giglio,Daniel McDonald,Eric A. Franzosa,Eric A. Franzosa,Rob Knight,Owen White,Curtis Huttenhower,Curtis Huttenhower +18 more
TL;DR: A second wave of data from the National Institutes of Health Human Microbiome Project is introduced, comprising 1,631 new metagenomes (2,355 total) targeting diverse body sites with multiple time points in 265 individuals to provide new characterizations of microbiome personalization.
Posted ContentDOI
A multimodal cell census and atlas of the mammalian primary motor cortex
Ricky S. Adkins,Andrew Aldridge,Shona Allen,Seth A. Ament,Xu An,Ethan J. Armand,Giorgio A. Ascoli,Trygve E. Bakken,Anita Bandrowski,Samik Banerjee,Nikolaos Barkas,Anna Bartlett,Helen S. Bateup,M. Margarita Behrens,Philipp Berens,Jim Berg,Matteo Bernabucci,Yves Bernaerts,Darren Bertagnolli,Tommaso Biancalani,Lara Boggeman,Sina Booeshaghi,Ian Bowman,Héctor Corrada Bravo,Cathryn R. Cadwell,Edward M. Callaway,Benjamin Carlin,Carolyn O’Connor,Robert A. Carter,Tamara Casper,Rosa Castanon,Jesus Ramon Castro,Rebecca K. Chance,Apaala Chatterjee,Huaming Chen,Jerold Chun,Carlo Colantuoni,Jonathan Crabtree,Heather Huot Creasy,Kirsten Crichton,Megan Crow,Florence D’Orazi,Tanya L. Daigle,Rachel A. Dalley,Nick Dee,Kylee Degatano,Benjamin Dichter,Dinh Diep,Liya Ding,Songlin Ding,Bertha Dominguez,Hong-Wei Dong,Weixiu Dong,Elizabeth L. Dougherty,Sandrine Dudoit,Joseph R. Ecker,Stephen W. Eichhorn,Rongxin Fang,Victor Felix,Guoping Feng,Zhao Feng,Stephan Fischer,Conor Fitzpatrick,Olivia Fong,Nicholas N. Foster,William Galbavy,James C. Gee,Satrajit S. Ghosh,Michelle G. Giglio,Thomas R. Gillespie,Jesse Gillis,Melissa Goldman,Jeff Goldy,Hui Gong,Lin Gou,Michael Grauer,Yaroslav O. Halchenko,Julie M. Harris,Leonard Hartmanis,Joshua T. Hatfield,Michael Hawrylycz,Brian Helba,Brian R. Herb,Ronna Hertzano,Houri Hintiryan,Karla E. Hirokawa,Dirk Hockemeyer,Rebecca D. Hodge,Greg Hood,Gregory D. Horwitz,Xiaomeng Hou,Lijuan Hu,Qiwen Hu,Josh Huang,Bing-Xing Huo,Tony Ito-Cole,Matthew W. Jacobs,Xueyan Jia,Shengdian Jiang,Tao Jiang,Xiaolong Jiang,Xin Jin,Nikolas L. Jorstad,Brian E. Kalmbach,Jayaram Kancherla,C. Dirk Keene,Kathleen Kelly,Farzaneh Khajouei,Peter V. Kharchenko,Gukhan Kim,Andrew L. Ko,Dmitry Kobak,Kishori Konwar,Daniel J. Kramer,Fenna M. Krienen,Matthew Kroll,Xiuli Kuang,Hsien-Chi Kuo,Rachael Larsen,Kanan Lathia,Sophie Laturnus,Angus Y. Lee,Cheng-Ta Lee,Kuo-Fen Lee,Ed S. Lein,Phil Lesnar,Anan Li,Xiangning Li,Xu Li,Yang Eric Li,Yaoyao Li,Yuanyuan Li,Byung Kook Lim,Sten Linnarsson,Christine S. Liu,Hanqing Liu,Lijuan Liu,Jacinta Lucero,Chongyuan Luo,Qingming Luo,Evan Z. Macosko,Anup Mahurkar,Maryann E. Martone,Katherine Matho,Steven A. McCarroll,Carrie McCracken,Delissa McMillen,Elanine Miranda,Partha P. Mitra,Paula Assakura Miyazaki,Judith Mizrachi,Stephanie Mok,Eran A. Mukamel,Shalaka Mulherkar,Naeem Nadaf,Maitham Naeemi,Arun Narasimhan,Joseph R. Nery,Lydia Ng,John Ngai,Thuc Nghi Nguyen,Lance Nickel,Philip R. Nicovich,Sheng-Yong Niu,Vasilis Ntranos,Michael Nunn,Dustin Olley,Joshua Orvis,Julia K. Osteen,Pavel Osten,Scott F. Owen,Lior Pachter,Ramesh Palaniswamy,C. Palmer,Yan Pang,Hanchuan Peng,Thanh Pham,Antonio Pinto-Duarte,Nongluk Plongthongkum,Olivier Poirion,Sebastian Preissl,Elizabeth Purdom,Lei Qu,Mohammad S. Rashid,Nora Reed,Aviv Regev,Bing Ren,Miao Ren,Christine Rimorin,Davide Risso,Angeline Rivkin,Rodrigo Muñoz-Castañeda,William J. Romanow,Alexander J. Ropelewski,Hector Roux de Bézieux,Zongcai Ruan,Rickard Sandberg,Steven Savoia,Federico Scala,Michael Schor,Elise Shen,Kimberly Siletti,Jared B. Smith,Kimberly A. Smith,Saroja Somasundaram,Yuanyuan Song,Staci A. Sorensen,David A. Stafford,Kelly Street,Josef Sulc,Susan M. Sunkin,Valentine Svensson,Pengcheng Tan,Zheng Huan Tan,Bosiljka Tasic,Carol L. Thompson,Wei Tian,Timothy L. Tickle,Michael Tieu,Jonathan T. Ting,Andreas S. Tolias,Amy Torkelson,Herman Tung,Eeshit Dhaval Vaishnav,Koen Van den Berge,Cindy T. J. van Velthoven,Charles R. Vanderburg,Matthew B. Veldman,Minh Vu,Wayne Wakeman,Peng Wang,Quanxin Wang,Xinxin Wang,Yimin Wang,Yun Wang,Joshua D. Welch,Owen White,Elora W Williams,Fangming Xie,Peng Xie,Feng Xiong,William Yang,Anna Marie Yanny,Zizhen Yao,Lulu Yin,Yang Yu,Jing Yuan,Hongkui Z +247 more
TL;DR: This study reveals a unified molecular genetic landscape of cortical cell types that congruently integrates their transcriptome, open chromatin and DNA methylation maps, and establishes a unified and mechanistic framework of neuronal cell type organization that integrates multi-layered molecular genetic and spatial information with multi-faceted phenotypic properties.
Journal ArticleDOI
Iron restriction inside macrophages regulates pulmonary host defense against Rhizopus species
Angeliki M. Andrianaki,Irene Kyrmizi,Kalliopi Thanopoulou,Clara Baldin,Elias Drakos,Sameh S. M. Soliman,Amol C. Shetty,Carrie McCracken,Tonia Akoumianaki,Kostas Stylianou,Petros Ioannou,Charalampos Pontikoglou,Helen A. Papadaki,Maria Tzardi,Valérie Belle,Emilien Ettiene,Anne Beauvais,George Samonis,Dimitrios P. Kontoyiannis,Evangelos Andreakos,Vincent M. Bruno,Ashraf S. Ibrahim,Georgios Chamilos +22 more
TL;DR: It is shown that iron restriction inside the phagosome of macrophages is an essential component of the host defense against Rhizopus, the main species causing mucormycosis.
Journal ArticleDOI
Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions.
Joana C. Silva,Emmanuel Cornillot,Carrie McCracken,Sahar Usmani-Brown,Ankit Dwivedi,Olukemi O. Ifeonu,Jonathan Crabtree,Hanzel T. Gotia,Azan Z. Virji,Christelle Reynes,Jacques Colinge,Vidya Prasanna Kumar,Lauren Lawres,Joseph E. Pazzi,Jozelyn Pablo,Chris Hung,Jana Brancato,Priti Kumari,Joshua Orvis,Kyle Tretina,Marcus C. Chibucos,Sandy Ott,Lisa Sadzewicz,Naomi Sengamalay,Amol C. Shetty,Qi Su,Luke J. Tallon,Claire M. Fraser,Roger Frutos,Douglas M. Molina,Peter J. Krause,Choukri Ben Mamoun +31 more
TL;DR: The genomic and immunological data presented herein provide the first insights into the determinants of B. microti interaction with its mammalian hosts and their relevance for understanding the selective pressures acting on parasite evolution.
Journal ArticleDOI
The Human Disease Ontology 2022 update.
Lynn M. Schriml,James B. Munro,Mike Schor,Dustin Olley,Carrie McCracken,Victor Felix,J Allen Baron,Rebecca C. Jackson,Susan M. Bello,Cynthia F. Bearer,Richard Lichenstein,Katharine Bisordi,Nicole Campion Dialo,Michelle G. Giglio,Carol L. Greene +14 more
TL;DR: The Human Disease Ontology (DO) (www.diseaseontology.org) database as discussed by the authors has significantly expanded the disease content and enhanced the userbase and website since the DO's 2018 Nucleic Acids Research DATABASE issue paper.