Journal ArticleDOI
An updated phylogeny of Sordariomycetes based on phylogenetic and molecular clock evidence
Sinang Hongsanan,Sinang Hongsanan,Sajeewa S. N. Maharachchikumbura,Kevin D. Hyde,Kevin D. Hyde,Milan C. Samarakoon,Rajesh Jeewon,Qi Zhao,Abdullah M. Al-Sadi,Ali H. Bahkali +9 more
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TLDR
An updated classification of accepted subclasses, orders of Sordariomycetes is provided and divergence times are used to provide additional evidence to stabilize ranking of taxa in the class.Abstract:
The previous phylogenies of Sordariomycetes by M.E. Barr, O.E. Eriksson and D.L. Hawksworth, and T. Lumbsch and S. Huhndorf, were mainly based on morphology and thus were somewhat subjective. Later outlines by T. Lumbsch and S. Huhndorf, and Maharachchikumbura and co-authors, took into account phylogenetic evidence. However, even these phylogenetic driven arrangements for Sordariomycetes, were somewhat subjective, as the arrangements in trees depended on many variables, such as number of taxa, different gene regions and methods used in the analyses. What is needed is extra evidence to help standardize ranking in the fungi. Estimation of divergence times using molecular clock methods has been proposed for providing additional rational for higher ranking of taxa. Thus, in Sordariomycetes, a divergence period (i.e. 200–300 MYA) can be used as criteria to judge when a group of related taxa evolved and what rank they should be given. In this paper, we provide an updated classification of accepted subclasses, orders of Sordariomycetes and use divergence times to provide additional evidence to stabilize ranking of taxa in the class. We point out and discuss discrepancies where the phylogenetic tree conflicts with the molecular clock.read more
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Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
Guo Jie Li,Kevin D. Hyde,Kevin D. Hyde,Kevin D. Hyde,Rui-Lin Zhao,Sinang Hongsanan,Sinang Hongsanan,Faten A. Abdel-Aziz,Mohamed A. Abdel-Wahab,Mohamed A. Abdel-Wahab,Pablo Alvarado,Genivaldo Alves-Silva,Joseph F. Ammirati,Hiran A. Ariyawansa,Abhishek Baghela,Ali H. Bahkali,Michael Beug,D. Jayarama Bhat,Dimitar Bojantchev,Thitiya Boonpratuang,Timur S. Bulgakov,Erio Camporesi,Marcela C. Boro,Oldriska Ceska,Dyutiparna Chakraborty,Jia-Jia Chen,K. W. Thilini Chethana,Putarak Chomnunti,Giovanni Consiglio,Bao-Kai Cui,Dong-Qin Dai,Yu Cheng Dai,Dinushani A. Daranagama,Dinushani A. Daranagama,Kanad Das,Monika C. Dayarathne,Monika C. Dayarathne,Eske De Crop,Rafael J. V. De Oliveira,Carlos Alberto Fragoso de Souza,José I. de Souza,Bryn T. M. Dentinger,Bryn T. M. Dentinger,Asha J. Dissanayake,Mingkwan Doilom,Mingkwan Doilom,E. Ricardo Drechsler-Santos,Masoomeh Ghobad-Nejhad,Sean P. Gilmore,Aristóteles Góes-Neto,Michał Gorczak,Charles H. Haitjema,Kalani Kanchana Hapuarachchi,Kalani Kanchana Hapuarachchi,Akira Hashimoto,Akira Hashimoto,Mao Qiang He,Mao Qiang He,John K. Henske,Kazuyuki Hirayama,María Josefina Iribarren,Subashini C. Jayasiri,Ruvishika S. Jayawardena,Sun Jeong Jeon,Gustavo Henrique Jerônimo,Ana L. Jesus,E. B. Gareth Jones,Ji Chuan Kang,Samantha C. Karunarathna,Samantha C. Karunarathna,Paul M. Kirk,Sirinapa Konta,Sirinapa Konta,Eric Kuhnert,Ewald Langer,Haeng Sub Lee,Hyang Burm Lee,Wen-Jing Li,Wen-Jing Li,Xinghong Li,Kare Liimatainen,Diogo Xavier Lima,Chuan Gen Lin,Chuan Gen Lin,Jian-Kui Liu,Xings Zhong Liu,Zuo Yi Liu,J. Jennifer Luangsa-ard,Robert Lücking,H. Thorsten Lumbsch,Saisamorn Lumyong,Eduardo M. Leaño,Agostina V. Marano,Misato Matsumura,Misato Matsumura,Eric H. C. McKenzie,Suchada Mongkolsamrit,Peter E. Mortimer,Thi Thuong Thuong Nguyen,Tuula Niskanen,Chada Norphanphoun,Chada Norphanphoun,Michelle A. O’Malley,Sittiporn Parnmen,Julia Pawłowska,Rekhani H. Perera,Rekhani H. Perera,Rungtiwa Phookamsak,Rungtiwa Phookamsak,Chayanard Phukhamsakda,Chayanard Phukhamsakda,Carmen L. A. Pires-Zottarelli,Olivier Raspé,Mateus Arduvino Reck,Sarah C. O. Rocha,André L. C. M. A. de Santiago,Indunil C. Senanayake,Ledo Setti,Qiu Ju Shang,Sanjay K. Singh,Esteban Benjamin Sir,Kevin V. Solomon,Jie Song,Prasert Srikitikulchai,Marc Stadler,Satinee Suetrong,Hayato Takahashi,Takumasa Takahashi,Kazuaki Tanaka,Li Ping Tang,Kasun M. Thambugala,Donnaya Thanakitpipattana,Michael K. Theodorou,Benjarong Thongbai,Tuksaporn Thummarukcharoen,Qing Tian,Qing Tian,Saowaluck Tibpromma,Saowaluck Tibpromma,Annemieke Verbeken,Alfredo Vizzini,Josef Vlasák,Kerstin Voigt,Dhanushka N. Wanasinghe,Dhanushka N. Wanasinghe,Yong Wang,Gothamie Weerakoon,Hua An Wen,Ting-Chi Wen,Nalin N. Wijayawardene,Sarunyou Wongkanoun,Marta Wrzosek,Yuan Pin Xiao,Yuan Pin Xiao,Jianchu Xu,Ji Ye Yan,Jing Yang,Shu Da Yang,Yu Hu,Jin-Feng Zhang,Jie Zhao,Li-Wei Zhou,Derek Peršoh,Alan J. L. Phillips,Sajeewa S. N. Maharachchikumbura +164 more
TL;DR: This paper is a compilation of notes on 142 fungal taxa, including five new families, 20 new genera, and 100 new species, representing a wide taxonomic and geographic range.
Journal ArticleDOI
High-level classification of the Fungi and a tool for evolutionary ecological analyses
Leho Tedersoo,Leho Tedersoo,Leho Tedersoo,Santiago Sánchez-Ramírez,Urmas Kõljalg,Urmas Kõljalg,Mohammad Bahram,Mohammad Bahram,Markus Döring,Dmitry Schigel,Dmitry Schigel,Tom W. May,Martin Ryberg,Kessy Abarenkov +13 more
TL;DR: An updated phylum- and class-level fungal classification accounting for monophyly and divergence time so that the main taxonomic ranks are more informative and an example of testing evolutionary ecological hypotheses based on a global soil fungal data set is provided.
Journal ArticleDOI
Outline of Fungi and fungus-like taxa
Nalin N. Wijayawardene,Kevin D. Hyde,L. K. T. Al-Ani,L. K. T. Al-Ani,Leho Tedersoo,Danny Haelewaters,Kunhiraman C. Rajeshkumar,R. L Zhao,André Aptroot,Dmitry V. Leontyev,R. K. Saxena,Yuri Tokarev,Dong-Qin Dai,Peter M. Letcher,Steven L. Stephenson,Damien Ertz,H. T. Lumbsch,Martin Kukwa,I. V. Issi,Hugo Madrid,Alan J. L. Phillips,Laura Selbmann,Walter P. Pfliegler,Enikő Horváth,K. Bensch,Paul M. Kirk,K. Kolaríková,Huzefa A. Raja,Renate Radek,Viktor Papp,V. Dima,J. Ma,Elaine Malosso,Susumu Takamatsu,Susumu Takamatsu,Gerhard Rambold,P. B. Gannibal,Dagmar Triebel,Ajay Kumar Gautam,Shubhi Avasthi,Satinee Suetrong,Einar Timdal,Sally C. Fryar,Gregorio Delgado,Martina Réblová,Mingkwan Doilom,Somayeh Dolatabadi,Julia Pawłowska,Richard A. Humber,Rampai Kodsueb,Iván Sánchez-Castro,B. T. Goto,D. K. A. Silva,F. A. de Souza,Fritz Oehl,G. A. da Silva,Janusz Błaszkowski,Khadija Jobim,Leonor Costa Maia,F. R. Barbosa,P. O. Fiuza,Pradeep K. Divakar,Belle Damodara Shenoy,Rafael F. Castañeda-Ruiz,Sayanh Somrithipol,A. A. Lateef,Samantha C. Karunarathna,Samantha C. Karunarathna,Samantha C. Karunarathna,Saowaluck Tibpromma,Saowaluck Tibpromma,Saowaluck Tibpromma,Peter E. Mortimer,Dhanushka N. Wanasinghe,Dhanushka N. Wanasinghe,Dhanushka N. Wanasinghe,Rungtiwa Phookamsak,J. Xu,Y. Wang,F. Tian,P. Alvarado,D. W. Li,I. Kusan,Neven Matočec,Armin Mešić,Zdenko Tkalčec,Sajeewa S. N. Maharachchikumbura,Moslem Papizadeh,Gabriela Heredia,Felipe Wartchow,Mounes Bakhshi,Eric W.A. Boehm,Noha H. Youssef,V. P. Hustad,James D. Lawrey,André Luiz Cabral Monteiro de Azevedo Santiago,Jadson D. P. Bezerra,Cristina Maria de Souza-Motta,A. L. Firmino,Qing Tian,Jos Houbraken,Sinang Hongsanan,Kazuaki Tanaka,Asha J. Dissanayake,Josiane Santana Monteiro,Hans-Peter Grossart,Ave Suija,Gothamie Weerakoon,Javier Etayo,Andrei Tsurykau,V. Vázquez,Paul G. Mungai,Ulrike Damm,Q. R. Li,Han Zhang,Saranyaphat Boonmee,Y. Z. Lu,Alejandra Gabriela Becerra,Bryce Kendrick,Francis Q. Brearley,Jurga Motiejunaite,B. O. Sharma,Roshni Khare,Subhash Gaikwad,Dsa Wijesundara,L. Z. Tang,M. Q. He,Adam Flakus,Pamela Rodriguez-Flakus,Mikhail P. Zhurbenko,Eric H. C. McKenzie,Marc Stadler,Darbhe J. Bhat,Jian-Kui Liu,Mubashar Raza,Rajesh Jeewon,E. S. Nassonova,María Prieto,R. G. U. Jayalal,Makbule Erdoğdu,Andrey Yurkov,Martin Schnittler,Oleg N. Shchepin,Yuri K. Novozhilov,Alexandre G. S. Silva-Filho,Eleni Gentekaki,P. Liu,J. C. Cavender,Y. Kang,S. Mohammad,L. F. Zhang,R. F. Xu,Y. M. Li,Monika C. Dayarathne,Anusha H. Ekanayaka,Ting-Chi Wen,C. Y. Deng,Olinto Liparini Pereira,Sudhir Navathe,David L. Hawksworth,Xinlei Fan,Lakmali S. Dissanayake,E. Kuhnert,Marco Thines +163 more
TL;DR: This article provides an outline of the classification of the kingdom Fungi (including fossil fungi), and treats 19 phyla of fungi, including all currently described orders of fungi.
Journal ArticleDOI
Notes for genera: Ascomycota
Nalin N. Wijayawardene,Kevin D. Hyde,Kunhiraman C. Rajeshkumar,David L. Hawksworth,Hugo Madrid,Paul M. Kirk,Uwe Braun,Rajshree V. Singh,Pedro W. Crous,Martin Kukwa,Robert Lücking,Cletus P. Kurtzman,Andrey Yurkov,Danny Haelewaters,André Aptroot,H. Thorsten Lumbsch,Einar Timdal,Damien Ertz,Javier Etayo,Alan J. L. Phillips,Johannes Z. Groenewald,Moslem Papizadeh,Laura Selbmann,Monika C. Dayarathne,Gothamie Weerakoon,E. B. Gareth Jones,Satinee Suetrong,Qing Tian,Rafael F. Castañeda-Ruiz,Ali H. Bahkali,Ka-Lai Pang,Kazuaki Tanaka,Dong-Qin Dai,Jariya Sakayaroj,Martina Hujslová,Lorenzo Lombard,Belle Damodara Shenoy,Ave Suija,Sajeewa S. N. Maharachchikumbura,Kasun M. Thambugala,Dhanushka N. Wanasinghe,Bharati O. Sharma,Subhash Gaikwad,Gargee Pandit,Laura Zucconi,Silvano Onofri,Eleonora Egidi,Huzefa A. Raja,Rampai Kodsueb,Marcela Eugenia da Silva Cáceres,Sergio Pérez-Ortega,Patrícia Oliveira Fiuza,Josiane Santana Monteiro,Larissa N. Vasilyeva,Roger G. Shivas,María Prieto,Mats Wedin,Ibai Olariaga,A. A. Lateef,Yamini Agrawal,Seyed Abolhassan Shahzadeh Fazeli,Mohammad Ali Amoozegar,Guo Zhu Zhao,Walter P. Pfliegler,Gunjan Sharma,Magdalena Oset,Mohamed A. Abdel-Wahab,Susumu Takamatsu,K. Bensch,Nimali I. de Silva,André De Kesel,Anuruddha Karunarathna,Saranyaphat Boonmee,Donald H. Pfister,Yong-Zhong Lu,Zong-Long Luo,Nattawut Boonyuen,Dinushani A. Daranagama,Indunil C. Senanayake,Subashini C. Jayasiri,Milan C. Samarakoon,Xiang-Yu Zeng,Mingkwan Doilom,Luis Quijada,Sillma Rampadarath,Gabriela Heredia,Asha J. Dissanayake,Ruvishika S. Jayawardana,Rekhani H. Perera,Li Zhou Tang,Chayanard Phukhamsakda,Margarita Hernández-Restrepo,Xiao-Ya Ma,Saowaluck Tibpromma,Luís Fernando Pascholati Gusmão,Darshani Weerahewa,Samantha C. Karunarathna +96 more
TL;DR: This work is intended to provide the foundation for updating the ascomycete component of the “Without prejudice list of generic names of Fungi” published in 2013, which will be developed into a list of protected generic names.
Journal ArticleDOI
Notes, outline and divergence times of Basidiomycota
Mao Qiang He,Mao Qiang He,Rui-Lin Zhao,Kevin D. Hyde,Dominik Begerow,Martin Kemler,Andrey Yurkov,Eric H. C. McKenzie,Olivier Raspé,Makoto Kakishima,Santiago Sánchez-Ramírez,Else C. Vellinga,Roy E. Halling,Viktor Papp,Ivan V. Zmitrovich,Bart Buyck,Damien Ertz,Nalin N. Wijayawardene,Bao-Kai Cui,Nathan Schoutteten,Xin Zhan Liu,Tai Hui Li,Yi Jian Yao,Xin Yu Zhu,An Qi Liu,Guo Jie Li,Ming Zhe Zhang,Zhi Lin Ling,Bin Cao,Vladimír Antonín,Teun Boekhout,Bianca Denise Barbosa da Silva,Eske De Crop,Cony Decock,Bálint Dima,Arun Kumar Dutta,Jack W. Fell,József Geml,Masoomeh Ghobad-Nejhad,Admir José Giachini,Tatiana Baptista Gibertoni,Sergio P. Gorjón,Danny Haelewaters,Danny Haelewaters,Shuang Hui He,Brendan P. Hodkinson,Egon Horak,Tamotsu Hoshino,Alfredo Justo,Young Woon Lim,Nelson Menolli,Armin Mešić,Jean-Marc Moncalvo,Jean-Marc Moncalvo,Gregory M. Mueller,László Nagy,R. Henrik Nilsson,Machiel E. Noordeloos,Jorinde Nuytinck,Takamichi Orihara,Cheewangkoon Ratchadawan,Mario Rajchenberg,Alexandre G. S. Silva-Filho,Marcelo Aloisio Sulzbacher,Zdenko Tkalčec,Ricardo Valenzuela,Annemieke Verbeken,Alfredo Vizzini,Felipe Wartchow,Tie Zheng Wei,Michael Weiß,Chang Lin Zhao,Paul M. Kirk +72 more
TL;DR: Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.
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