Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells
Wanjuan Yang,Jorge Soares,Patricia Greninger,Elena J. Edelman,Howard Lightfoot,Simon A. Forbes,Nidhi Bindal,Dave Beare,James Smith,I. Richard Thompson,Sridhar Ramaswamy,P. Andrew Futreal,Daniel A. Haber,Michael R. Stratton,Cyril H. Benes,Ultan McDermott,Mathew J. Garnett +16 more
TLDR
The Genomics of Drug Sensitivity in Cancer (GDSC) provides a unique resource incorporating large drug sensitivity and genomic datasets to facilitate the discovery of new therapeutic biomarkers for cancer therapies.Abstract:
Alterations in cancer genomes strongly influence clinical responses to treatment and in many instances are potent biomarkers for response to drugs. The Genomics of Drug Sensitivity in Cancer (GDSC) database (www.cancerRxgene.org) is the largest public resource for information on drug sensitivity in cancer cells and molecular markers of drug response. Data are freely available without restriction. GDSC currently contains drug sensitivity data for almost 75 000 experiments, describing response to 138 anticancer drugs across almost 700 cancer cell lines. To identify molecular markers of drug response, cell line drug sensitivity data are integrated with large genomic datasets obtained from the Catalogue of Somatic Mutations in Cancer database, including information on somatic mutations in cancer genes, gene amplification and deletion, tissue type and transcriptional data. Analysis of GDSC data is through a web portal focused on identifying molecular biomarkers of drug sensitivity based on queries of specific anticancer drugs or cancer genes. Graphical representations of the data are used throughout with links to related resources and all datasets are fully downloadable. GDSC provides a unique resource incorporating large drug sensitivity and genomic datasets to facilitate the discovery of new therapeutic biomarkers for cancer therapies.read more
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COSMIC: exploring the world's knowledge of somatic mutations in human cancer
Simon A. Forbes,David Beare,Prasad Gunasekaran,Kenric Leung,Nidhi Bindal,Harry Boutselakis,Minjie Ding,Sally Bamford,Charlotte G. Cole,Sari Ward,Chai Yin Kok,Mingming Jia,Tisham De,Jon W. Teague,Michael R. Stratton,Ultan McDermott,Peter J. Campbell +16 more
TL;DR: COSMIC, the Catalogue Of Somatic Mutations In Cancer is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer, describing 2 002 811 coding point mutations in over one million tumor samples and across most human genes.
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A community effort to assess and improve drug sensitivity prediction algorithms
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Genetic and transcriptional evolution alters cancer cell line drug response
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TL;DR: This analysis showed that IARC has more TP53 somatic mutation data than genomic repositories (29,000 vs. 4,000), but the more complete screening achieved by genomic studies highlighted some overlooked facts about TP53 mutations.
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TL;DR: After 5 years of follow-up, continuous treatment of chronic-phase CML with imatinib as initial therapy was found to induce durable responses in a high proportion of patients.
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COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer.
Simon A. Forbes,Nidhi Bindal,Sally Bamford,Charlotte G. Cole,Chai Yin Kok,David Beare,Mingming Jia,Rebecca Shepherd,Kenric Leung,Andrew Menzies,Jon W. Teague,Peter J. Campbell,Michael R. Stratton,P. Andrew Futreal +13 more
TL;DR: With all genomic information recently updated to GRCh37, COSMIC integrates many diverse types of mutation information and is making much closer links with Ensembl and other data resources.
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