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Global biogeography of highly diverse protistan communities in soil

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TLDR
Soil protistan communities were highly diverse, approaching the extreme diversity of their bacterial counterparts across the same sites, and like bacterial taxa, protistan taxa were not globally distributed, and the composition of these communities diverged considerably across large geographic distances.
Abstract
Protists are ubiquitous members of soil microbial communities, but the structure of these communities, and the factors that influence their diversity, are poorly understood. We used barcoded pyrosequencing to survey comprehensively the diversity of soil protists from 40 sites across a broad geographic range that represent a variety of biome types, from tropical forests to deserts. In addition to taxa known to be dominant in soil, including Cercozoa and Ciliophora, we found high relative abundances of groups such as Apicomplexa and Dinophyceae that have not previously been recognized as being important components of soil microbial communities. Soil protistan communities were highly diverse, approaching the extreme diversity of their bacterial counterparts across the same sites. Like bacterial taxa, protistan taxa were not globally distributed, and the composition of these communities diverged considerably across large geographic distances. However, soil protistan and bacterial communities exhibit very different global-scale biogeographical patterns, with protistan communities strongly structured by climatic conditions that regulate annual soil moisture availability.

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Citations
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Journal ArticleDOI

Global diversity and geography of soil fungi

Leho Tedersoo, +57 more
- 28 Nov 2014 - 
TL;DR: Diversity of most fungal groups peaked in tropical ecosystems, but ectomycorrhizal fungi and several fungal classes were most diverse in temperate or boreal ecosystems, and manyfungal groups exhibited distinct preferences for specific edaphic conditions (such as pH, calcium, or phosphorus).
Journal ArticleDOI

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

TL;DR: Fungi typically live in highly diverse communities composed of multiple ecological guilds, and FUNGuild is a tool that can be used to taxonomically parse fungal OTUs by ecological guild independent of sequencing platform or analysis pipeline.
Journal ArticleDOI

Belowground biodiversity and ecosystem functioning

TL;DR: Recent progress in understanding belowground biodiversity and its role in determining the ecological and evolutionary responses of terrestrial ecosystems to current and future environmental change are reviewed.
Journal ArticleDOI

The global soil community and its influence on biogeochemistry

TL;DR: The state of science relating soil organisms to biogeochemical processes is reviewed, focusing particularly on the importance of microbial community variation on decomposition and turnover of soil organic matter.
Journal ArticleDOI

Soil biodiversity and human health.

TL;DR: Current research indicates that soil biodiversity can be maintained and partially restored if managed sustainably, and promotes the ecological complexity and robustness of soil biodiversity through improved management practices.
References
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Journal ArticleDOI

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

TL;DR: A new criterion for triggering the extension of word hits, combined with a new heuristic for generating gapped alignments, yields a gapped BLAST program that runs at approximately three times the speed of the original.
Journal ArticleDOI

UCHIME improves sensitivity and speed of chimera detection

TL;DR: UCHIME has better sensitivity than ChimeraSlayer (previously the most sensitive database method), especially with short, noisy sequences, and in testing on artificial bacterial communities with known composition, UCHIME de novo sensitivity is shown to be comparable to Perseus.
Journal ArticleDOI

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

TL;DR: This work sequences a diverse array of 25 environmental samples and three known “mock communities” at a depth averaging 3.1 million reads per sample to demonstrate excellent consistency in taxonomic recovery and recapture diversity patterns that were previously reported on the basis of metaanalysis of many studies from the literature.
Journal ArticleDOI

UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

TL;DR: The results illustrate that UniFrac provides a new way of characterizing microbial communities, using the wealth of environmental rRNA sequences, and allows quantitative insight into the factors that underlie the distribution of lineages among environments.
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