Genome sequence of the cultivated cotton Gossypium arboreum
Fuguang Li,Guangyi Fan,Kunbo Wang,Fengming Sun,Youlu Yuan,Guoli Song,Qin Li,Zhiying Ma,Cairui Lu,Changsong Zou,Wenbin Chen,Xinming Liang,Haihong Shang,Weiqing Liu,Chengcheng Shi,Guanghui Xiao,Caiyun Gou,Wuwei Ye,Xun Xu,Xueyan Zhang,Hengling Wei,Zhifang Li,Guiyin Zhang,Junyi Wang,Kun Liu,Russell J. Kohel,Richard G. Percy,John Z. Yu,Yu-Xian Zhu,Jun Wang,Shuxun Yu +30 more
TLDR
Comparative transcriptome studies showed the key role of the nucleotide binding site (NBS)-encoding gene family in resistance to Verticillium dahliae and the involvement of ethylene in the development of cotton fiber cells.Abstract:
Yu-Xian Zhu, Jun Wang, Shuxun Yu and colleagues report sequencing and assembly of the genome of cultivated cotton, Gossypium arboreum. Comparison with the Gossypium raimondii genome sequence provides insights into genome evolution and speciation, and identifies two shared whole-genome duplication events occurring before the speciation event around 2–13 million years ago.read more
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Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
Boulos Chalhoub,Shengyi Liu,Isobel A. P. Parkin,Haibao Tang,Haibao Tang,Xiyin Wang,Julien Chiquet,Harry Belcram,Chaobo Tong,Birgit Samans,Margot Correa,Corinne Da Silva,Jérémy Just,Cyril Falentin,Chu Shin Koh,Isabelle Le Clainche,Maria Bernard,Pascal Bento,Benjamin Noel,Karine Labadie,Adriana Alberti,Mathieu Charles,Dominique Arnaud,Hui Guo,Christian Daviaud,Salman Alamery,Kamel Jabbari,Kamel Jabbari,Meixia Zhao,Patrick P. Edger,Houda Chelaifa,David C. Tack,Gilles Lassalle,Imen Mestiri,Nicolas Schnel,Marie-Christine Le Paslier,Guangyi Fan,Victor Renault,Philippe E. Bayer,Agnieszka A. Golicz,Sahana Manoli,Tae-Ho Lee,Vinh Ha Dinh Thi,Smahane Chalabi,Qiong Hu,Chuchuan Fan,Reece Tollenaere,Yunhai Lu,Christophe Battail,Jinxiong Shen,Christine Sidebottom,Xinfa Wang,Aurélie Canaguier,Aurélie Chauveau,Aurélie Bérard,G. Deniot,Mei Guan,Zhongsong Liu,Fengming Sun,Yong Pyo Lim,Eric Lyons,Christopher D. Town,Ian Bancroft,Xiaowu Wang,Jinling Meng,Jianxin Ma,J. Chris Pires,Graham J.W. King,Dominique Brunel,Régine Delourme,Michel Renard,Jean-Marc Aury,Keith L. Adams,Jacqueline Batley,Jacqueline Batley,Rod J. Snowdon,Jörg Tost,David Edwards,David Edwards,Yongming Zhou,Wei Hua,Andrew G. Sharpe,Andrew H. Paterson,Chunyun Guan,Patrick Wincker,Patrick Wincker,Patrick Wincker +86 more
TL;DR: The polyploid genome of Brassica napus, which originated from a recent combination of two distinct genomes approximately 7500 years ago and gave rise to the crops of rape oilseed, is sequenced.
Journal ArticleDOI
Sequencing of allotetraploid cotton ( Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
Tianzhen Zhang,Yan Hu,Wenkai Jiang,Lei Fang,Xueying Guan,Jiedan Chen,Jinbo Zhang,Christopher A. Saski,Brian E. Scheffler,David M. Stelly,Amanda M. Hulse-Kemp,Qun Wan,Bingliang Liu,Chunxiao Liu,Sen Wang,Mengqiao Pan,Yangkun Wang,Dawei Wang,Wenxue Ye,Lijing Chang,Wenpan Zhang,Qingxin Song,Ryan C. Kirkbride,Xiao-Ya Chen,Elizabeth S. Dennis,Danny J. Llewellyn,Daniel G. Peterson,Peggy Thaxton,Don C. Jones,Qiong Wang,Xiaoyang Xu,Hua Zhang,Huaitong Wu,Lei Zhou,Gaofu Mei,Shuqi Chen,Yue Tian,Dan Xiang,Xinghe Li,Jian Ding,Qiyang Zuo,Linna Tao,Yunchao Liu,Ji Li,Yu Lin,Yuanyuan Hui,Zhisheng Cao,Caiping Cai,Xiefei Zhu,Zhi Jiang,Baoliang Zhou,Wangzhen Guo,Ruiqiang Li,Z. Jeffrey Chen +53 more
TL;DR: Genomic signatures of selection and domestication are associated with positively selected genes (PSGs) for fiber improvement in the A subgenome and for stress tolerance in the D subgenomes, suggesting asymmetric evolution.
Journal ArticleDOI
Genome sequence of cultivated Upland cotton ( Gossypium hirsutum TM-1) provides insights into genome evolution
Fuguang Li,Guangyi Fan,Cairui Lu,Guanghui Xiao,Changsong Zou,Russell J. Kohel,Zhiying Ma,Haihong Shang,Xiongfeng Ma,Jianyong Wu,Xinming Liang,Gai Huang,Richard G. Percy,Kun Liu,Weihua Yang,Wenbin Chen,Xiongming Du,Chengcheng Shi,Youlu Yuan,Wuwei Ye,Xin Liu,Xueyan Zhang,Weiqing Liu,Hengling Wei,Shoujun Wei,Guodong Huang,Xianlong Zhang,Shuijin Zhu,He Zhang,Fengming Sun,Xingfen Wang,Jie Liang,Jiahao Wang,Qiang He,Leihuan Huang,Jun Wang,Jinjie Cui,Guoli Song,Kunbo Wang,Xun Xu,John Z. Yu,Yu-Xian Zhu,Shuxun Yu +42 more
TL;DR: A draft genome using 181-fold paired-end sequences assisted by fivefold BAC-to-BAC sequences and a high-resolution genetic map is produced for G. hirsutum, revealing conserved gene order and concerted evolution of different regulatory mechanisms for Cellulose synthase and 1-Aminocyclopropane-1-carboxylic acid oxidase1 and 3 may be important for enhanced fiber production.
Journal ArticleDOI
Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton.
Yan Hu,Yan Hu,Jiedan Chen,Lei Fang,Lei Fang,Zhiyuan Zhang,Wei Ma,Yongchao Niu,Longzhen Ju,Jieqiong Deng,Ting Zhao,Ting Zhao,Jinmin Lian,Kobi Baruch,David D. Fang,Xia Liu,Yong-Ling Ruan,Yong-Ling Ruan,Mehboob-ur Rahman,Jinlei Han,Kai Wang,Qiong Wang,Huaitong Wu,Gaofu Mei,Yihao Zang,Zegang Han,Chenyu Xu,Weijuan Shen,Duofeng Yang,Zhanfeng Si,Fan Dai,Liangfeng Zou,Fei Huang,Bai Yulin,Yu-Gao Zhang,Avital Brodt,Hilla Ben-Hamo,Xiefei Zhu,Baoliang Zhou,Xueying Guan,Xueying Guan,Shuijin Zhu,Xiao-Ya Chen,Tianzhen Zhang,Tianzhen Zhang +44 more
TL;DR: High-quality de novo–assembled genomes of two cultivated allotetraploid cotton species and whole-genome comparative analyses provide insights into the evolution of cotton genomes and improvement of fiber quality and resilience to stress.
Journal ArticleDOI
Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants.
Xin Qiao,Qionghou Li,Hao Yin,Kaijie Qi,Leiting Li,Runze Wang,Shaoling Zhang,Andrew H. Paterson +7 more
TL;DR: A comprehensive landscape of different modes of gene duplication across the plant kingdom is identified by comparing 141 genomes, which provides a solid foundation for further investigation of the dynamic evolution of duplicate genes.
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