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Journal ArticleDOI

Non-coding RNA genes and the modern RNA world.

Sean R. Eddy
- 01 Dec 2001 - 
- Vol. 2, Iss: 12, pp 919-929
TLDR
Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.
Abstract
Non-coding RNA (ncRNA) genes produce functional RNA molecules rather than encoding proteins. However, almost all means of gene identification assume that genes encode proteins, so even in the era of complete genome sequences, ncRNA genes have been effectively invisible. Recently, several different systematic screens have identified a surprisingly large number of new ncRNA genes. Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.

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Citations
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Book ChapterDOI

An Introduction to RNA Databases

TL;DR: The history and technology behind RNA databases are briefly discussed in this paper, and various methods of data collection and curation and their impact on both the scope and accuracy of the resulting databases are discussed.
Book ChapterDOI

An Introduction to RNA Databases

TL;DR: This work examines differing methods of data collection and curation and discusses their impact on both the scope and accuracy of the resulting databases, and demonstrates these principles through detailed examination of four leading RNA databases: Noncode, miRBase, Rfam, and SILVA.
Journal ArticleDOI

Structural insights into piRNA biogenesis.

TL;DR: A review of piRNA biogenesis and functions can be found in this paper , where the authors summarize the recent progress in piRNAs and functions, especially the molecular mechanisms by which piRN biogenesis-related proteins contribute to piRNA processing.
Journal ArticleDOI

Exploring Heterocycle-Spermine Conjugates as Modulators of Oncogenic microRNAs Biogenesis

TL;DR: In this article, a structure-based design of efficient and especially selective inhibitors can be performed based on the secondary and tertiary configuration of the targeted RNA, which is a promising target for oncogenic microRNAs.
Journal ArticleDOI

Multiple 3D RNA structure superposition using neighbor joining

TL;DR: MultiSETTER combines SETTER's decomposition of RNA structures into non-overlapping structural subunits with the multiple sequence alignment algorithm ClustalW adapted for the structure alignment.
References
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Journal ArticleDOI

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 - 
TL;DR: The results of an international collaboration to produce and make freely available a draft sequence of the human genome are reported and an initial analysis is presented, describing some of the insights that can be gleaned from the sequence.
Journal ArticleDOI

The sequence of the human genome.

J. Craig Venter, +272 more
- 16 Feb 2001 - 
TL;DR: Comparative genomic analysis indicates vertebrate expansions of genes associated with neuronal function, with tissue-specific developmental regulation, and with the hemostasis and immune systems are indicated.
Journal ArticleDOI

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

TL;DR: Two small lin-4 transcripts of approximately 22 and 61 nt were identified in C. elegans and found to contain sequences complementary to a repeated sequence element in the 3' untranslated region (UTR) of lin-14 mRNA, suggesting that lin- 4 regulates lin- 14 translation via an antisense RNA-RNA interaction.
Journal ArticleDOI

The Complete Genome Sequence of Escherichia coli K-12

TL;DR: The 4,639,221-base pair sequence of Escherichia coli K-12 is presented and reveals ubiquitous as well as narrowly distributed gene families; many families of similar genes within E. coli are also evident.
Journal ArticleDOI

Genetic regulatory mechanisms in the synthesis of proteins.

TL;DR: The synthesis of enzymes in bacteria follows a double genetic control, which appears to operate directly at the level of the synthesis by the gene of a shortlived intermediate, or messenger, which becomes associated with the ribosomes where protein synthesis takes place.
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Initial sequencing and analysis of the human genome.

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