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Journal ArticleDOI

Non-coding RNA genes and the modern RNA world.

Sean R. Eddy
- 01 Dec 2001 - 
- Vol. 2, Iss: 12, pp 919-929
TLDR
Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.
Abstract
Non-coding RNA (ncRNA) genes produce functional RNA molecules rather than encoding proteins. However, almost all means of gene identification assume that genes encode proteins, so even in the era of complete genome sequences, ncRNA genes have been effectively invisible. Recently, several different systematic screens have identified a surprisingly large number of new ncRNA genes. Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.

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Citations
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Journal ArticleDOI

A computational model for RNA multiple structural alignment

TL;DR: A novel graph theoretic model is introduced for analyzing algorithms based on this approach, it is proved that the RNA multiple alignment problem is NP-Complete in this model, and a polynomial time algorithm is presented that approximates the optimal structure of size S within a factor of O(log^2S).
Journal ArticleDOI

Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle

TL;DR: Use of variant category-based genome-wide significance thresholds can marginally increase the power to detect the candidate genes in cattle with continued improvements in annotation of the bovine genome, and it is anticipated that the growing usefulness of variant categories-based significance thresholds will be demonstrated.
Patent

Triggered covalent probes for imaging and silencing genetic expression

TL;DR: In this article, the use of cross-linking probes to covalently bind probes to nucleic acid targets is described. But the method is restricted to the case where the probe consists of an initiator region that is able to bind to a first portion of a target nucleus, a probe region linked too the initiator, and a blocking region hybridized to the probe region.
Book ChapterDOI

Surface plasmon resonance study of RNA-aminoglycoside interactions.

TL;DR: This chapter focuses on describing procedures performed in the SPR binding assay, using aminoglycoside–bacterial ribosome 16S A-site binding as an example, and the methods of data analysis to derive the equilibrium constant and binding stoichiometry are discussed.
Journal ArticleDOI

Detection of RNA expression from pseudogenes and non-coding genomic regions of Mycobacterium leprae.

TL;DR: Results indicate that some of pseudogenes and non-coding genomic regions are transcribed in Mycobacterium leprae and analysis of RNA expression patterns including pseudogene andNon-Coding genomic region in M. lePrae may be useful in understanding the pathological states of infected patients.
References
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Journal ArticleDOI

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 - 
TL;DR: The results of an international collaboration to produce and make freely available a draft sequence of the human genome are reported and an initial analysis is presented, describing some of the insights that can be gleaned from the sequence.
Journal ArticleDOI

The sequence of the human genome.

J. Craig Venter, +272 more
- 16 Feb 2001 - 
TL;DR: Comparative genomic analysis indicates vertebrate expansions of genes associated with neuronal function, with tissue-specific developmental regulation, and with the hemostasis and immune systems are indicated.
Journal ArticleDOI

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

TL;DR: Two small lin-4 transcripts of approximately 22 and 61 nt were identified in C. elegans and found to contain sequences complementary to a repeated sequence element in the 3' untranslated region (UTR) of lin-14 mRNA, suggesting that lin- 4 regulates lin- 14 translation via an antisense RNA-RNA interaction.
Journal ArticleDOI

The Complete Genome Sequence of Escherichia coli K-12

TL;DR: The 4,639,221-base pair sequence of Escherichia coli K-12 is presented and reveals ubiquitous as well as narrowly distributed gene families; many families of similar genes within E. coli are also evident.
Journal ArticleDOI

Genetic regulatory mechanisms in the synthesis of proteins.

TL;DR: The synthesis of enzymes in bacteria follows a double genetic control, which appears to operate directly at the level of the synthesis by the gene of a shortlived intermediate, or messenger, which becomes associated with the ribosomes where protein synthesis takes place.
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Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 -