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Journal ArticleDOI

Non-coding RNA genes and the modern RNA world.

Sean R. Eddy
- 01 Dec 2001 - 
- Vol. 2, Iss: 12, pp 919-929
TLDR
Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.
Abstract
Non-coding RNA (ncRNA) genes produce functional RNA molecules rather than encoding proteins. However, almost all means of gene identification assume that genes encode proteins, so even in the era of complete genome sequences, ncRNA genes have been effectively invisible. Recently, several different systematic screens have identified a surprisingly large number of new ncRNA genes. Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.

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Citations
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Journal ArticleDOI

Genes, genomes, and genomics

TL;DR: An analysis of the shifting meanings of the term genome is illustrated, which suggests that an organism’s DNA constitutes a far more complex system designed to adapt and respond to the environment in which it finds itself.
Journal ArticleDOI

RNPomics: Defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles

TL;DR: The RNP approach provides an efficient way to identify new functional small ncRNA candidates, involved in RNP formation, located in intergenic as well as intronic regions of the genome.
Journal ArticleDOI

Competing Endogenous RNA Regulations in Neurodegenerative Disorders: Current Challenges and Emerging Insights.

TL;DR: The evidence supporting ceRNA regulation in neurodegenerative disorders is focused on and three critical points related to the ceRNA regulatory mechanism are addressed: the microRNA (miRNA) and ceRNA hierarchies in cross-regulations; the balance between destabilization and stable binding in ceRNA–miRNA interactions; and the true extent to which ce RNA regulatory mechanisms are involved in both health and disease.
Journal ArticleDOI

Rich parameterization improves RNA structure prediction.

TL;DR: It is shown that the application of more detailed models indeed improves prediction quality, while the corresponding running time of the folding algorithm remains fast, and a new RNA folding prediction model is proposed, which results in a significantly higher prediction quality than that of previous models.
Journal ArticleDOI

A Novel Class of Developmentally Regulated Noncoding RNAs in Leishmania

TL;DR: A new class of noncoding RNAs ranging from ∼300 to 600 nucleotides in size that are expressed specifically in the intracellular amastigote stage that is the first report describing developmentally regulated ncRNAs in protozoan parasites.
References
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Journal ArticleDOI

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 - 
TL;DR: The results of an international collaboration to produce and make freely available a draft sequence of the human genome are reported and an initial analysis is presented, describing some of the insights that can be gleaned from the sequence.
Journal ArticleDOI

The sequence of the human genome.

J. Craig Venter, +272 more
- 16 Feb 2001 - 
TL;DR: Comparative genomic analysis indicates vertebrate expansions of genes associated with neuronal function, with tissue-specific developmental regulation, and with the hemostasis and immune systems are indicated.
Journal ArticleDOI

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

TL;DR: Two small lin-4 transcripts of approximately 22 and 61 nt were identified in C. elegans and found to contain sequences complementary to a repeated sequence element in the 3' untranslated region (UTR) of lin-14 mRNA, suggesting that lin- 4 regulates lin- 14 translation via an antisense RNA-RNA interaction.
Journal ArticleDOI

The Complete Genome Sequence of Escherichia coli K-12

TL;DR: The 4,639,221-base pair sequence of Escherichia coli K-12 is presented and reveals ubiquitous as well as narrowly distributed gene families; many families of similar genes within E. coli are also evident.
Journal ArticleDOI

Genetic regulatory mechanisms in the synthesis of proteins.

TL;DR: The synthesis of enzymes in bacteria follows a double genetic control, which appears to operate directly at the level of the synthesis by the gene of a shortlived intermediate, or messenger, which becomes associated with the ribosomes where protein synthesis takes place.
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Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
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