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Journal ArticleDOI

Non-coding RNA genes and the modern RNA world.

Sean R. Eddy
- 01 Dec 2001 - 
- Vol. 2, Iss: 12, pp 919-929
TLDR
Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.
Abstract
Non-coding RNA (ncRNA) genes produce functional RNA molecules rather than encoding proteins. However, almost all means of gene identification assume that genes encode proteins, so even in the era of complete genome sequences, ncRNA genes have been effectively invisible. Recently, several different systematic screens have identified a surprisingly large number of new ncRNA genes. Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.

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Citations
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Journal ArticleDOI

Aberrant regulation of messenger RNA 3 -untranslated region in human cancer

TL;DR: The mutations in 3′UTR regulatory sequences as well as the aberrant levels, subcellular localization, and posttranslational modifications of trans-acting factors that can promote or enhance the malignant phenotype of cancer cells are reviewed.
Journal ArticleDOI

Evidence for a preferential targeting of 3′-UTRs by cis-encoded natural antisense transcripts

TL;DR: It is inferred that the function of many 3′-to-3′ overlaps is indeed antisense regulation, and this findings underscore the preference for, and conservation of,3′-UTR-targeted antisenseregulation, and the importance of 3″-UTRs in gene regulation.
Journal ArticleDOI

RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs

TL;DR: By generating a specialised cDNA library from four different developmental stages of Drosophila melanogaster, 66 candidates for small non-messenger RNAs (snmRNAs) are identified and confirmed their expression by northern blot analysis and detection of two RNA species from this group implies that certain snmRNA species are processed from alternatively spliced pre-m RNAs.
Journal ArticleDOI

RNA folding in vivo.

TL;DR: There is some evidence that in vitro and invivo RNA folding pathways share basic features, however, it is unclear whether the rules deduced from in vitro folding experiments generally apply to invivo conditions.
Journal ArticleDOI

TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs

TL;DR: TurboFold II augments the structure prediction capabilities of TurboFold by additionally providing multiple sequence alignments, and has comparable alignment accuracy with MAFFT and higher accuracy than other tools.
References
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Journal ArticleDOI

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 - 
TL;DR: The results of an international collaboration to produce and make freely available a draft sequence of the human genome are reported and an initial analysis is presented, describing some of the insights that can be gleaned from the sequence.
Journal ArticleDOI

The sequence of the human genome.

J. Craig Venter, +272 more
- 16 Feb 2001 - 
TL;DR: Comparative genomic analysis indicates vertebrate expansions of genes associated with neuronal function, with tissue-specific developmental regulation, and with the hemostasis and immune systems are indicated.
Journal ArticleDOI

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

TL;DR: Two small lin-4 transcripts of approximately 22 and 61 nt were identified in C. elegans and found to contain sequences complementary to a repeated sequence element in the 3' untranslated region (UTR) of lin-14 mRNA, suggesting that lin- 4 regulates lin- 14 translation via an antisense RNA-RNA interaction.
Journal ArticleDOI

The Complete Genome Sequence of Escherichia coli K-12

TL;DR: The 4,639,221-base pair sequence of Escherichia coli K-12 is presented and reveals ubiquitous as well as narrowly distributed gene families; many families of similar genes within E. coli are also evident.
Journal ArticleDOI

Genetic regulatory mechanisms in the synthesis of proteins.

TL;DR: The synthesis of enzymes in bacteria follows a double genetic control, which appears to operate directly at the level of the synthesis by the gene of a shortlived intermediate, or messenger, which becomes associated with the ribosomes where protein synthesis takes place.
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Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 -