scispace - formally typeset
Journal ArticleDOI

Non-coding RNA genes and the modern RNA world.

Sean R. Eddy
- 01 Dec 2001 - 
- Vol. 2, Iss: 12, pp 919-929
TLDR
Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.
Abstract
Non-coding RNA (ncRNA) genes produce functional RNA molecules rather than encoding proteins. However, almost all means of gene identification assume that genes encode proteins, so even in the era of complete genome sequences, ncRNA genes have been effectively invisible. Recently, several different systematic screens have identified a surprisingly large number of new ncRNA genes. Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.

read more

Citations
More filters
Journal ArticleDOI

Initial sequencing and comparative analysis of the mouse genome.

Robert H. Waterston, +222 more
- 05 Dec 2002 - 
TL;DR: The results of an international collaboration to produce a high-quality draft sequence of the mouse genome are reported and an initial comparative analysis of the Mouse and human genomes is presented, describing some of the insights that can be gleaned from the two sequences.
Journal ArticleDOI

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

TL;DR: It is demonstrated that specific lincRNAs are transcriptionally regulated by key transcription factors in these processes such as p53, NFκB, Sox2, Oct4 (also known as Pou5f1) and Nanog, defining a unique collection of functional linc RNAs that are highly conserved and implicated in diverse biological processes.
PatentDOI

MicroRNAs in plants

TL;DR: Mutation of an Arabidopsis Dicer homolog, CARPEL FACTORY, prevents the accumulation of miRNAs, showing that similar mechanisms direct miRNA processing in plants and animals.
Journal ArticleDOI

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine

TL;DR: A support vector machine-based classifier, named Coding Potential Calculator (CPC), to assess the protein-coding potential of a transcript based on six biologically meaningful sequence features, which can discriminate coding from noncoding transcripts with high accuracy.
Journal ArticleDOI

Modular regulatory principles of large non-coding RNAs

TL;DR: This work synthesizes studies to provide an emerging model whereby large ncRNAs might achieve regulatory specificity through modularity, assembling diverse combinations of proteins and possibly RNA and DNA interactions.
References
More filters
Journal ArticleDOI

Ribonuclease P: an enzyme with an essential RNA component

TL;DR: The activity of ribonuclease P on precursor tRNA substrates from Escherichia coli can be abolished by pretreatment of this enzyme with micrococcal nuclease or pancreatic rib onuclease A, as well as by proteases and by thermal denaturation.
Journal ArticleDOI

A small nucleolar guide RNA functions both in 2′‐O‐ribose methylation and pseudouridylation of the U5 spliceosomal RNA

TL;DR: The U85 is the first example of a snoRNA that directs modification of an RNA polymerase II‐transcribed spliceosomal RNA and that functions both in RNA pseudouridylation and 2′‐O‐methylation.
Journal ArticleDOI

The path from the RNA world.

TL;DR: A sequential (step by step) Darwinian model for the evolution of life from the late stages of the RNA world through to the emergence of eukaryotes and prokaryotes, with a functional explanation that proKaryote ancestors underwent selection for thermophily and/or for rapid reproduction at least once in their history.
Journal ArticleDOI

The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding

TL;DR: It is found that the OxyS RNA inhibits fhlA translation by pairing with a short sequence overlapping the Shine–Dalgarno sequence, thereby blocking ribosome binding/translation.
Journal ArticleDOI

Relics from the RNA world.

TL;DR: The model as developed serves as an outgroup to root the tree of life and is an alternative to using sequence data for inferring properties of the earliest cells.
Related Papers (5)

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 -