scispace - formally typeset
Journal ArticleDOI

Non-coding RNA genes and the modern RNA world.

Sean R. Eddy
- 01 Dec 2001 - 
- Vol. 2, Iss: 12, pp 919-929
TLDR
Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.
Abstract
Non-coding RNA (ncRNA) genes produce functional RNA molecules rather than encoding proteins. However, almost all means of gene identification assume that genes encode proteins, so even in the era of complete genome sequences, ncRNA genes have been effectively invisible. Recently, several different systematic screens have identified a surprisingly large number of new ncRNA genes. Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.

read more

Citations
More filters
Journal ArticleDOI

PSSMTS: position specific scoring matrices on tree structures.

TL;DR: An improved method is proposed which extends a pairwise structural alignment method for RNA sequences to handle position specific scoring matrices and hence to incorporate motifs into structural alignment of RNA sequences.
Dissertation

Transcript profiling of small tissue samples using microarray technology

TL;DR: The sequence of the human and other genomes is described through a number of biological, technological and computational achievements during the 20th century and the devoted work of hundreds of researchers.
DissertationDOI

Comparative transcriptomics of long intergenic noncoding RNAs in Drosophila

TL;DR: This work represents the first comparative transcriptomic analyses of lincRNAs in Drosophila, and finds 22 high-confidence lincRNA homologs with conservation of multiple transcript-level features that warrant further biological investigation.
Proceedings ArticleDOI

A new method of rna secondary structure prediction based on genetics algorithms, machine learning

TL;DR: This paper proposes a novel RNA secondary structure prediction algorithm using a neural network model combined with genetics algorithms to improve the accuracy with largescale RNA sequence and structure data and indicates that the proposed method is superior to the common RNAsecondary structure prediction algorithms.
Journal ArticleDOI

RNAMotifContrast: a method to discover and visualize RNA structural motif subfamilies

TL;DR: RNAMotifContrast as mentioned in this paper focuses on analyzing the similarities and variations of RNA structural motif characteristics, where a graph is formed to represent the similarities among motifs, and a new traversal algorithm is applied to generate visualizations of their structural properties.
References
More filters
Journal ArticleDOI

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 - 
TL;DR: The results of an international collaboration to produce and make freely available a draft sequence of the human genome are reported and an initial analysis is presented, describing some of the insights that can be gleaned from the sequence.
Journal ArticleDOI

The sequence of the human genome.

J. Craig Venter, +272 more
- 16 Feb 2001 - 
TL;DR: Comparative genomic analysis indicates vertebrate expansions of genes associated with neuronal function, with tissue-specific developmental regulation, and with the hemostasis and immune systems are indicated.
Journal ArticleDOI

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

TL;DR: Two small lin-4 transcripts of approximately 22 and 61 nt were identified in C. elegans and found to contain sequences complementary to a repeated sequence element in the 3' untranslated region (UTR) of lin-14 mRNA, suggesting that lin- 4 regulates lin- 14 translation via an antisense RNA-RNA interaction.
Journal ArticleDOI

The Complete Genome Sequence of Escherichia coli K-12

TL;DR: The 4,639,221-base pair sequence of Escherichia coli K-12 is presented and reveals ubiquitous as well as narrowly distributed gene families; many families of similar genes within E. coli are also evident.
Journal ArticleDOI

Genetic regulatory mechanisms in the synthesis of proteins.

TL;DR: The synthesis of enzymes in bacteria follows a double genetic control, which appears to operate directly at the level of the synthesis by the gene of a shortlived intermediate, or messenger, which becomes associated with the ribosomes where protein synthesis takes place.
Related Papers (5)

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 -