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Journal ArticleDOI

Non-coding RNA genes and the modern RNA world.

Sean R. Eddy
- 01 Dec 2001 - 
- Vol. 2, Iss: 12, pp 919-929
TLDR
Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.
Abstract
Non-coding RNA (ncRNA) genes produce functional RNA molecules rather than encoding proteins. However, almost all means of gene identification assume that genes encode proteins, so even in the era of complete genome sequences, ncRNA genes have been effectively invisible. Recently, several different systematic screens have identified a surprisingly large number of new ncRNA genes. Non-coding RNAs seem to be particularly abundant in roles that require highly specific nucleic acid recognition without complex catalysis, such as in directing post-transcriptional regulation of gene expression or in guiding RNA modifications.

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Citations
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Posted ContentDOI

CLAN: the CrossLinked reads ANalysis tool

TL;DR: A novel algorithm for duplex read mapping, called CrossLinked reads ANalysis tool (CLAN), which demonstrates drastically improved sensitivity and high alignment accuracy when applied to real crosslinked RNA sequencing data.

Modular Organization and Composability of RNA

TL;DR: Although structural modularity is not a general property of natural RNAs, precursor microRNAs are strongly modular, which it is hypothesize is a consequence of their unique biogenesis and evolutionary history.
Book ChapterDOI

Understanding the Role of (Advanced) Machine Learning in Metagenomic Workflows

TL;DR: In this article, the authors present several challenges that may impede broader use of ML and especially deep learning in metagenomics, and propose a solution to overcome these challenges using deep learning.
Journal ArticleDOI

Genome-wide identification and characterization of Fusarium circinatum-responsive lncRNAs in Pinus radiata

TL;DR: In this article , a genome-wide analysis of P. radiata lncRNAs was carried out using strand-specific paired-end RNA sequencing, from Pinus radiata samples inoculated with Fusarium circinatum at an early stage of infection.
Dissertation

Contrôle de l’expression des gènes par les micro-ARN nucléaires : étude des mécanismes moléculaires

TL;DR: In this paper, the authors present a series of experiments visant a caracteriser les facteurs moleculaires requis for l’activite nucleaire des micro-ARN.
References
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Journal ArticleDOI

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 - 
TL;DR: The results of an international collaboration to produce and make freely available a draft sequence of the human genome are reported and an initial analysis is presented, describing some of the insights that can be gleaned from the sequence.
Journal ArticleDOI

The sequence of the human genome.

J. Craig Venter, +272 more
- 16 Feb 2001 - 
TL;DR: Comparative genomic analysis indicates vertebrate expansions of genes associated with neuronal function, with tissue-specific developmental regulation, and with the hemostasis and immune systems are indicated.
Journal ArticleDOI

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

TL;DR: Two small lin-4 transcripts of approximately 22 and 61 nt were identified in C. elegans and found to contain sequences complementary to a repeated sequence element in the 3' untranslated region (UTR) of lin-14 mRNA, suggesting that lin- 4 regulates lin- 14 translation via an antisense RNA-RNA interaction.
Journal ArticleDOI

The Complete Genome Sequence of Escherichia coli K-12

TL;DR: The 4,639,221-base pair sequence of Escherichia coli K-12 is presented and reveals ubiquitous as well as narrowly distributed gene families; many families of similar genes within E. coli are also evident.
Journal ArticleDOI

Genetic regulatory mechanisms in the synthesis of proteins.

TL;DR: The synthesis of enzymes in bacteria follows a double genetic control, which appears to operate directly at the level of the synthesis by the gene of a shortlived intermediate, or messenger, which becomes associated with the ribosomes where protein synthesis takes place.
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Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 -