L
Lincoln D. Stein
Researcher at Ontario Institute for Cancer Research
Publications - 16
Citations - 2824
Lincoln D. Stein is an academic researcher from Ontario Institute for Cancer Research. The author has contributed to research in topics: Gene & Somatic cell. The author has an hindex of 10, co-authored 16 publications receiving 2666 citations. Previous affiliations of Lincoln D. Stein include University of Toronto.
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Journal ArticleDOI
A genome-wide association search for type 2 diabetes genes in African Americans.
Nichole D. Palmer,Caitrin W. McDonough,Pamela J. Hicks,B H Roh,M R Wing,S S An,Jessica M. Hester,Jessica N. Cooke,Meredith A. Bostrom,Megan E. Rudock,Matthew E. Talbert,Joshua P. Lewis,Assiamira Ferrara,Lingyi Lu,Julie T. Ziegler,Michèle M. Sale,Jasmin Divers,Daniel Shriner,Adebowale Adeyemo,Charles N. Rotimi,Ng Mcy.,Carl D. Langefeld,Barry I. Freedman,Donald W. Bowden,Benjamin F. Voight,Laura J. Scott,Valgerdur Steinthorsdottir,Andrew P. Morris,Christian Dina,Ryan P. Welch,Eleftheria Zeggini,Cornelia Huth,Yurii S. Aulchenko,Gudmar Thorleifsson,Laura J. McCulloch,Teresa Ferreira,Harald Grallert,Najaf Amin,Guanming Wu,Cristen J. Willer,Soumya Raychaudhuri,Steven A. McCarroll,Claudia Langenberg,O M Hofmann,Josée Dupuis,Lu Qi,A V Segrè,M. van Hoek,Pau Navarro,Kristin G. Ardlie,Beverley Balkau,Rafn Benediktsson,Amanda J. Bennett,Roza Blagieva,Eric Boerwinkle,Lori L. Bonnycastle,Kristina Bengtsson Boström,Bert Bravenboer,Suzannah Bumpstead,N P Burtt,Guillaume Charpentier,Peter S. Chines,Marilyn C. Cornelis,David Couper,Gabriel Crawford,Doney Asf.,Kathryn Elliott,A L Elliott,Michael R. Erdos,Caroline S. Fox,Christopher S. Franklin,Martha Ganser,Christian Gieger,Niels Grarup,Todd Green,Simon J. Griffin,C J Groves,Candace Guiducci,Samy Hadjadj,N Hassanali,C. Herder,Bo Isomaa,Anne U. Jackson,Johnson Prv.,Torben Jørgensen,Kao Whl.,N Klopp,Augustine Kong,Peter Kraft,Johanna Kuusisto,Torsten Lauritzen,Man Li,Aloysius G Lieverse,Cecilia M. Lindgren,Valeriya Lyssenko,Meghan L. Marré,Thomas Meitinger,Kristian Midthjell,Mario A. Morken,Narisu Narisu,P. M. Nilsson,Katharine R. Owen,Felicity Payne,Perry Jrb.,Petersen A-K.,Carl G. P. Platou,Christine Proença,Inga Prokopenko,Wolfgang Rathmann,N W Rayner,Neil R. Robertson,Ghislain Rocheleau,Michael Roden,Mike Sampson,Richa Saxena,B M Shields,Peter Shrader,Gunnar Sigurdsson,Thomas Sparsø,Klaus Strassburger,Heather M. Stringham,Qi Sun,Amy J. Swift,Barbara Thorand,Jean Tichet,Tiinamaija Tuomi,R. M. van Dam,T.W. van Haeften,T van Herpt,J. V. van Vliet-Ostaptchouk,G B Walters,Michael N. Weedon,Cisca Wijmenga,Jacqueline C. M. Witteman,Richard N. Bergman,Stéphane Cauchi,Francis S. Collins,Anna L. Gloyn,Ulf Gyllensten,Torben Hansen,Winston Hide,Graham A. Hitman,Albert Hofman,David J. Hunter,Kristian Hveem,Markku Laakso,Karen L. Mohlke,Andrew D. Morris,Palmer Cna.,Peter P. Pramstaller,Igor Rudan,Eric J.G. Sijbrands,Lincoln D. Stein,Jaakko Tuomilehto,A.G. Uitterlinden,M Walker,Nicholas J. Wareham,Richard M. Watanabe,Gonçalo R. Abecasis,Bernhard O. Boehm,Harry Campbell,Mark J. Daly,Andrew T. Hattersley,Frank B. Hu,James B. Meigs,James S. Pankow,Oluf Pedersen,Wichmann H-E.,Inês Barroso,Jose C. Florez,Timothy M. Frayling,Leif Groop,R Sladek,Unnur Thorsteinsdottir,James F. Wilson,Thomas Illig,Philippe Froguel,C M van Duijn,Kari Stefansson,David Altshuler,Michael Boehnke,Mark I. McCarthy,Nicole Soranzo,Eleanor Wheeler,Nicole L. Glazer,Nabila Bouatia-Naji,Reedik Mägi,Joshua C. Randall,Toby Johnson,Paul Elliott,Denis Rybin,Peter Henneman,Abbas Dehghan,Jouke-Jan Hottenga,Kijoung Song,Anuj Goel,Josephine M. Egan,Taina K. Lajunen,Alex S. F. Doney,Stavroula Kanoni,Christine Cavalcanti-Proença,Meena Kumari,Nicholas J. Timpson,Carina Zabena,Erik Ingelsson,Ping An,Jeffrey R. O'Connell,Jian'an Luan,Amanda F. Elliott,Rosa Maria Roccasecca,François Pattou,Praveen Sethupathy,Yavuz Ariyurek,Philip J. Barter,John Beilby,Yoav Ben-Shlomo,Sven Bergmann,Murielle Bochud,Amélie Bonnefond,Knut Borch-Johnsen,Yvonne Böttcher,Eric J. Brunner,Suzannah Bumpstead,Chen Y-Di.,Peter S. Chines,Robert Clarke,Coin Ljm.,Mark E. Cooper,Laura Crisponi,Day Inm.,de Geus Ejc.,Jérôme Delplanque,A C Fedson,Antje Fischer-Rosinsky,Nita G. Forouhi,R.R. Frants,MariaGrazia Franzosi,Pilar Galan,Mark O. Goodarzi,J. Graessler,Scott M. Grundy,R. Gwilliam,Göran Hallmans,Naomi Hammond,Xijing Han,Hartikainen A-L.,Caroline Hayward,Simon C. Heath,Serge Hercberg,Andrew A. Hicks,David R. Hillman,Aroon D. Hingorani,Jennie Hui,Joseph Hung,A. Jula,Marika Kaakinen,Jaakko Kaprio,Y A Kesaniemi,Mika Kivimäki,Beatrice Knight,Sini Koskinen,Peter Kovacs,Kirsten Ohm Kyvik,G M Lathrop,Debbie A Lawlor,O Le Bacquer,Cécile Lecoeur,Yun Li,Robert W. Mahley,Massimo Mangino,Alisa K. Manning,María Teresa Martínez-Larrad,Jarred B. McAteer,Ruth McPherson,Christine Meisinger,David Melzer,David Meyre,B. D. Mitchell,Sutapa Mukherjee,Silvia Naitza,Matt J. Neville,B.A. Oostra,Marco Orrù,Ruth E. Pakyz,Giuseppe Paolisso,C. Pattaro,D. Pearson,John F. Peden,Nancy L. Pedersen,M. Perola,Pfeiffer Afh.,Irene Pichler,Ozren Polašek,Danielle Posthuma,Simon C. Potter,Anneli Pouta,M. A. Province,Bruce M. Psaty,Kenneth Rice,Samuli Ripatti,F. Rivadeneira,Olov Rolandsson,A. Sandbaek,M. S. Sandhu,Serena Sanna,Avan Aihie Sayer,Paul Scheet,Udo Seedorf,Stephen J. Sharp,Beverley M. Shields,Sijbrands Ejg.,Angela Silveira,Laila Simpson,Andrew B. Singleton,Nicholas L. Smith,Ulla Sovio,A J Swift,H E Syddall,Syvänen A-C.,Toshiko Tanaka,Anke Tönjes,Andre G. Uitterlinden,K W van Dijk,Dhiraj Varma,Sophie Visvikis-Siest,Veronique Vitart,Nicole Vogelzangs,Gerard Waeber,P J Wagner,Andrew Walley,Kim L. Ward,Hugh Watkins,Sarah H. Wild,Gonneke Willemsen,Witteman Jcm.,Yarnell Jwg.,Diana Zelenika,Björn Zethelius,Guangju Zhai,Jing Hua Zhao,M. C. Zillikens,Ingrid B. Borecki,Loos Rjf.,Pierre Meneton,Magnusson Pke.,David M. Nathan,Gordon H. Williams,Kaisa Silander,Veikko Salomaa,George Davey Smith,Stefan R. Bornstein,Peter Schwarz,Jochen Spranger,F Karpe,Alan R. Shuldiner,Cyrus Cooper,George Dedoussis,Manuel Serrano-Ríos,Lars Lind,Lyle J. Palmer,Paul W. Franks,Shah Ebrahim,Michael Marmot,Alan F. Wright,Michael Stumvoll,Anders Hamsten,Thomas A. Buchanan,Timo T. Valle,Jerome I. Rotter,David S. Siscovick,Penninx Bwjh.,Dorret I. Boomsma,Panos Deloukas,Tim D. Spector,Luigi Ferrucci,Anyuan Cao,Angelo Scuteri,David Schlessinger,Manuela Uda,Aimo Ruokonen,Jarvelin M-R.,Dawn M. Waterworth,Peter Vollenweider,Leena Peltonen,Vincent Mooser +384 more
TL;DR: It is suggested that multiple loci underlie T2DM susceptibility in the African-American population and that these loci are distinct from those identified in other ethnic populations.
Journal ArticleDOI
Novel Loci for Adiponectin Levels and Their Influence on Type 2 Diabetes and Metabolic Traits: A Multi-Ethnic Meta-Analysis of 45,891 Individuals
Zari Dastani,Hivert M-F.,Hivert M-F.,N J Timpson,Perry Jrb.,Perry Jrb.,Xin Yuan,Robert A. Scott,Peter Henneman,Iris M. Heid,Jorge R. Kizer,Lyytikäinen L-P.,Christian Fuchsberger,Toshiko Tanaka,Toshiko Tanaka,Andrew P. Morris,Kerrin S. Small,Kerrin S. Small,Aaron Isaacs,Marian Beekman,Stefan Coassin,Kurt Lohman,Lu Qi,Stavroula Kanoni,Stavroula Kanoni,James S. Pankow,Uh H-W.,Ying Wu,Aurelian Bidulescu,Laura J. Rasmussen-Torvik,Greenwood Cmt.,Martin Ladouceur,Jonna L. Grimsby,Alisa K. Manning,Liu C-T.,Jaspal S. Kooner,Vincent Mooser,Peter Vollenweider,Karen Kapur,John C. Chambers,Nicholas J. Wareham,Claudia Langenberg,Rune R. Frants,K Willems-Vandijk,Ben A. Oostra,Sara M. Willems,Claudia Lamina,Thomas W. Winkler,Bruce M. Psaty,Bruce M. Psaty,Russel Tracy,Jennifer A. Brody,I Chen,J. Viikari,Mika Kähönen,Peter P. Pramstaller,David M. Evans,B. St Pourcain,Naveed Sattar,Andrew R. Wood,Stefania Bandinelli,Olga D. Carlson,Josephine M. Egan,Stefan Böhringer,D. van Heemst,Lyudmyla Kedenko,Kati Kristiansson,Nuotio M-L.,Loo B-M.,T.B. Harris,Melissa Garcia,Alka M. Kanaya,Margot Haun,Norman Klopp,Wichmann H-E.,Panos Deloukas,Panos Deloukas,E Katsareli,David Couper,Bruce Bartholow Duncan,Bruce Bartholow Duncan,M. Kloppenburg,Linda S. Adair,Judith B. Borja,James G. Wilson,Solomon K. Musani,Xiuqing Guo,Toby Johnson,Toby Johnson,Toby Johnson,Robert K. Semple,Tanya M. Teslovich,Tanya M. Teslovich,Matthew A. Allison,Susan Redline,Sarah G. Buxbaum,Karen L. Mohlke,Ingrid Meulenbelt,Christie M. Ballantyne,George Dedoussis,Frank B. Hu,Yongmei Liu,Bernhard Paulweber,Tim D. Spector,P E Slagboom,Luigi Ferrucci,Antti Jula,Markus Perola,Olli T. Raitakari,Jose C. Florez,Jose C. Florez,Jose C. Florez,Veikko Salomaa,Johan G. Eriksson,Timothy M. Frayling,Andrew A. Hicks,Terho Lehtimäki,George Davey Smith,David S. Siscovick,Florian Kronenberg,C.M. van Duijn,C.M. van Duijn,Loos Rjf.,Loos Rjf.,Dawn M. Waterworth,James B. Meigs,Josée Dupuis,Josée Dupuis,J B Richards,Benjamin F. Voight,Benjamin F. Voight,Benjamin F. Voight,Laura J. Scott,Valgerdur Steinthorsdottir,Christian Dina,Ryan P. Welch,Eleftheria Zeggini,Eleftheria Zeggini,Cornelia Huth,Yurii S. Aulchenko,Gudmar Thorleifsson,Laura J. McCulloch,Teresa Ferreira,Harald Grallert,Najaf Amin,G Wu,Cristen J. Willer,Soumya Raychaudhuri,Soumya Raychaudhuri,Steven A. McCarroll,Oliver Hofmann,Ayellet V. Segrè,Ayellet V. Segrè,M. van Hoek,M. van Hoek,Pau Navarro,Kristin G. Ardlie,Beverley Balkau,Beverley Balkau,Rafn Benediktsson,Amanda J. Bennett,Roza Blagieva,Eric Boerwinkle,Lori L. Bonnycastle,K B Boström,Bert Bravenboer,S Bumpstead,N P Burtt,Guillaume Charpentier,P S Chines,Marilyn C. Cornelis,G Crawford,G Crawford,Doney Asf.,Katherine S. Elliott,A L Elliott,Michael R. Erdos,Caroline S. Fox,Caroline S. Fox,Christopher S. Franklin,Martha Ganser,Christian Gieger,Niels Grarup,Todd Green,Todd Green,Simon J. Griffin,Christopher J. Groves,Candace Guiducci,Samy Hadjadj,Neelam Hassanali,Christian Herder,Bo Isomaa,Anne U. Jackson,Johnson Prv.,Torben Jørgensen,Kao Whl.,Augustine Kong,Peter Kraft,Johanna Kuusisto,T. Lauritzen,M Li,Aloysius G Lieverse,Cecilia M. Lindgren,Valeriya Lyssenko,Michel Marre,Thomas Meitinger,Kristian Midthjell,Mario A. Morken,Narisu Narisu,Peter M. Nilsson,Katharine R. Owen,Felicity Payne,Petersen A-K.,Carl G. P. Platou,Christine Proença,Inga Prokopenko,Wolfgang Rathmann,Nigel W. Rayner,Neil R. Robertson,Ghislain Rocheleau,Michael Roden,Mike Sampson,Richa Saxena,Richa Saxena,Richa Saxena,B M Shields,Peter Shrader,Gunnar Sigurdsson,Thomas Sparsø,Klaus Strassburger,Heather M. Stringham,Qi Sun,A J Swift,Barbara Thorand,Jean Tichet,Tiinamaija Tuomi,R. M. van Dam,T.W. van Haeften,T van Herpt,J. V. van Vliet-Ostaptchouk,G B Walters,Michael N. Weedon,Cisca Wijmenga,Jacqueline C. M. Witteman,Richard N. Bergman,Stéphane Cauchi,Francis S. Collins,Anna L. Gloyn,Ulf Gyllensten,Torben Hansen,Torben Hansen,Torben Hansen,Winston Hide,Graham A. Hitman,Albert Hofman,David J. Hunter,Kristian Hveem,Markku Laakso,A D Morris,Palmer Cna.,Palmer Cna.,Igor Rudan,Igor Rudan,Igor Rudan,Eric J.G. Sijbrands,Lincoln D. Stein,Jaakko Tuomilehto,A Uitterlinden,Mark Walker,Richard M. Watanabe,Gonçalo R. Abecasis,Bernhard O. Boehm,Harry Campbell,Mark J. Daly,Mark J. Daly,Mark J. Daly,Andrew T. Hattersley,Oluf Pedersen,Oluf Pedersen,Oluf Pedersen,Inês Barroso,L Groop,Robert Sladek,Unnur Thorsteinsdottir,Unnur Thorsteinsdottir,J.F. Wilson,Thomas Illig,Philippe Froguel,Philippe Froguel,C M van Duijn,Kari Stefansson,David Altshuler,Michael Boehnke,Mark I. McCarthy,Nicole Soranzo,Nicole Soranzo,Eleanor Wheeler,Nicole L. Glazer,Nabila Bouatia-Naji,Reedik Mägi,Joshua C. Randall,Paul Elliott,Paul Elliott,Denis Rybin,Abbas Dehghan,Jouke-Jan Hottenga,Kijoung Song,Anuj Goel,Taina K. Lajunen,Alex S. F. Doney,Christine Cavalcanti-Proença,Meena Kumari,N J Timpson,Carina Zabena,Erik Ingelsson,Erik Ingelsson,Ping An,Jeffrey R. O'Connell,Jian'an Luan,A Elliott,Rosa Maria Roccasecca,François Pattou,Praveen Sethupathy,Yavuz Ariyurek,Philip J. Barter,John Beilby,Yoav Ben-Shlomo,Sven Bergmann,Sven Bergmann,Murielle Bochud,Amélie Bonnefond,Knut Borch-Johnsen,Knut Borch-Johnsen,Yvonne Böttcher,Eric J. Brunner,S J Bumpstead,Chen Y-Di.,P Chines,Robert Clarke,Coin Ljm.,Mark E. Cooper,Laura Crisponi,Day Inm.,de Geus Ejc.,Jérôme Delplanque,A C Fedson,Antje Fischer-Rosinsky,Nita G. Forouhi,MariaGrazia Franzosi,Pilar Galan,Mark O. Goodarzi,J. Graessler,Scott M. Grundy,R. Gwilliam,Göran Hallmans,Naomi Hammond,Xijing Han,Hartikainen A-L.,Caroline Hayward,S C Heath,Serge Hercberg,David R. Hillman,Aroon D. Hingorani,Jennie Hui,Joseph Hung,Joseph Hung,Marika Kaakinen,Jaakko Kaprio,Jaakko Kaprio,Y A Kesaniemi,Mika Kivimäki,Beatrice Knight,Seppo Koskinen,Peter Kovacs,K O Kyvik,G M Lathrop,Debbie A Lawlor,O Le Bacquer,Cécile Lecoeur,Yun Li,Robert W. Mahley,Massimo Mangino,María Teresa Martínez-Larrad,Jarred B. McAteer,Jarred B. McAteer,Ruth McPherson,Christa Meisinger,David Melzer,David Meyre,Braxton D. Mitchell,Sutapa Mukherjee,Silvia Naitza,Matt Neville,Marco Orrù,Ruth E. Pakyz,Giuseppe Paolisso,Cristian Pattaro,Daniel S. Pearson,J F Peden,Nancy L. Pedersen,Pfeiffer Afh.,Irene Pichler,Ozren Polasek,Danielle Posthuma,Simon C. Potter,A Pouta,M. A. Province,Kenneth Rice,Samuli Ripatti,Samuli Ripatti,Fernando Rivadeneira,Olov Rolandsson,A. Sandbaek,M Sandhu,Serena Sanna,Avan Aihie Sayer,Paul Scheet,Udo Seedorf,Stephen J. Sharp,B Shields,Gunnar Sigurðsson,Sijbrands Ejg.,Sijbrands Ejg.,Angela Silveira,Laila Simpson,Andrew B. Singleton,Nicholas L. Smith,Nicholas L. Smith,Ulla Sovio,A Swift,Holly E. Syddall,Syvänen A-C.,Anke Tönjes,A G Uitterlinden,K W van Dijk,K W van Dijk,Dhiraj Varma,Sophie Visvikis-Siest,Veronique Vitart,N Vogelzangs,N Vogelzangs,Gerard Waeber,P J Wagner,P J Wagner,P J Wagner,Andrew Walley,Kim L. Ward,Hugh Watkins,Sarah H. Wild,Gonneke Willemsen,Witteman Jcm.,Yarnell Jwg.,Diana Zelenika,Björn Zethelius,Björn Zethelius,Guangju Zhai,Jing Hua Zhao,M C Zillikens,M C Zillikens,Ingrid B. Borecki,Pierre Meneton,Magnusson Pke.,David M. Nathan,Gordon H. Williams,Kaisa Silander,Kaisa Silander,Stefan R. Bornstein,Peter Schwarz,Jochen Spranger,Fredrik Karpe,Alan R. Shuldiner,Cyrus Cooper,Manuel Serrano-Ríos,Lars Lind,Lyle J. Palmer,Lyle J. Palmer,Paul W. Franks,Shah Ebrahim,Michael Marmot,Alan F. Wright,Michael Stumvoll,Anders Hamsten,Anders Hamsten,Thomas A. Buchanan,Timo T. Valle,Jerome I. Rotter,Penninx Bwjh.,Penninx Bwjh.,Dorret I. Boomsma,Dorret I. Boomsma,Anyuan Cao,Angelo Scuteri,Angelo Scuteri,David Schlessinger,Manuela Uda,Aimo Ruokonen,Jarvelin M-R.,Leena Peltonen,V Mooser,Kiran Musunuru,Kiran Musunuru,Albert V. Smith,Andrew C. Edmondson,Ioannis M. Stylianou,Masahiro Koseki,James P. Pirruccello,James P. Pirruccello,James P. Pirruccello,Daniel I. Chasman,Christopher T. Johansen,Sigrid W. Fouchier,Gina M. Peloso,Gina M. Peloso,Maja Barbalić,Sally L. Ricketts,J. C. Bis,Mary F. Feitosa,Marju Orho-Melander,Olle Melander,Xiaohui Li,Yoon Shin Cho,Min Jin Go,Young-Jin Kim,Lee J-Y.,Taesung Park,K Kim,Xueling Sim,Ong Rt-H.,Damien C. Croteau-Chonka,Leslie A. Lange,Josh Smith,Andreas Ziegler,Weihua Zhang,Zee Ryl.,John Whitfield,John R. Thompson,Ida Surakka,Ida Surakka,J.H. Smit,Juha Sinisalo,Jan Scott,Juha Saharinen,Chiara Sabatti,Lynda M. Rose,Robert Roberts,Mark J. Rieder,Alex N. Parker,Guillaume Paré,Christopher J. O'Donnell,Christopher J. O'Donnell,Markku S. Nieminen,Deborah A. Nickerson,Grant W. Montgomery,Wendy L. McArdle,David Masson,Nicholas G. Martin,Fabio Marroni,Gavin Lucas,Robert Luben,Lokki M-L.,Guillaume Lettre,Lenore J. Launer,Edward G. Lakatta,Reijo Laaksonen,Inke R. König,Khaw K-T.,Lee M. Kaplan,Åsa Johansson,Janssens Acjw.,Wilmar Igl,G K Hovingh,Christian Hengstenberg,Aki S. Havulinna,Aki S. Havulinna,Nicholas D. Hastie,T B Harris,Talin Haritunians,Alyson Hall,L C Groop,Elena Gonzalez,Nelson B. Freimer,Jeanette Erdmann,Kenechi Ejebe,Angela Döring,Anna F. Dominiczak,Serkalem Demissie,Serkalem Demissie,U de Faire,Mark J. Caulfield,S.M. Boekholdt,Themistocles L. Assimes,Thomas Quertermous,Mark Seielstad,Tien Yin Wong,Tai E-S.,Alan B. Feranil,Christopher W. Kuzawa,Herman A. Taylor,S. Gabriel,Hilma Holm,Vilmundur Gudnason,Ronald M. Krauss,Jose M. Ordovas,Jose M. Ordovas,Patricia B. Munroe,J S Kooner,Alan R. Tall,Robert A. Hegele,Kastelein Jjp.,Eric E. Schadt,David P. Strachan,Muredach P. Reilly,Nilesh J. Samani,Heribert Schunkert,L A Cupples,M S Sandhu,Paul M. Ridker,Daniel J. Rader,Sekar Kathiresan +618 more
TL;DR: A meta-analysis of genome-wide association studies in 39,883 individuals of European ancestry to identify genes associated with metabolic disease identifies novel genetic determinants of adiponectin levels, which, taken together, influence risk of T2D and markers of insulin resistance.
Journal ArticleDOI
Impact of outdated gene annotations on pathway enrichment analysis
Lina Wadi,Mona Meyer,Joel Weiser,Lincoln D. Stein,Lincoln D. Stein,Jüri Reimand,Jüri Reimand +6 more
TL;DR: It is found that the use of outdated resources has strongly affected practical genomic analysis and recent literature: 67% of ~3,900 publications in 2015 referenced outdated software that captured only 26% of biological processes and pathways identified using current resources.
Journal ArticleDOI
Redefining Genomic Privacy: Trust and Empowerment
Yaniv Erlich,James Bryan Williams,David Glazer,Kenneth Yocum,Nita A. Farahany,Maynard V. Olson,Arvind Narayanan,Lincoln D. Stein,Jan A. Witkowski,Robert C. Kain +9 more
TL;DR: This work proposes shifting the paradigm of protecting human subjects to techniques that facilitate trust between researchers and participants and creates a zero-sum game of privacy versus data utility.
Journal ArticleDOI
Candidate Cancer Driver Mutations in Distal Regulatory Elements and Long-Range Chromatin Interaction Networks.
Helen He Zhu,Helen He Zhu,Liis Uusküla-Reimand,Keren Isaev,Keren Isaev,Lina Wadi,Azad Alizada,Shimin Shuai,Shimin Shuai,Vincent Huang,Dike Aduluso-Nwaobasi,Marta Paczkowska,Diala Abd-Rabbo,Oliver Ocsenas,Oliver Ocsenas,Minggao Liang,J. Drew Thompson,Yao Li,Luyao Ruan,Michal Krassowski,Irakli Dzneladze,Jared T. Simpson,Jared T. Simpson,Mathieu Lupien,Mathieu Lupien,Lincoln D. Stein,Lincoln D. Stein,Paul C. Boutros,Michael D. Wilson,Jüri Reimand,Jüri Reimand +30 more
TL;DR: A driver discovery method is developed and analyzed 120,788 cis-regulatory modules (CRMs) across 1,844 whole tumor genomes from the ICGC-TCGA PCAWG project, finding 30 CRMs with enriched SNVs and indels (FDR < 0.05).