M
Mark Gerstein
Researcher at Yale University
Publications - 802
Citations - 172183
Mark Gerstein is an academic researcher from Yale University. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 168, co-authored 751 publications receiving 149578 citations. Previous affiliations of Mark Gerstein include Rutgers University & Structural Genomics Consortium.
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Journal ArticleDOI
Simulation of water around a model protein helix. 1. Two-dimensional projections of solvent structure
Mark Gerstein,R. M. Lynden-Bell +1 more
TL;DR: In this article, the water structure around a model α-helix in solution is investigated by molecular simulation and a marked contrast is seen between the hydration of the α and β carbons on one side of the helix axis and of the carbonyl oxygen on the other side.
Journal ArticleDOI
FAVOR: functional annotation of variants online resource and annotator for variation across the human genome
Hufeng Zhou,Theodore Arapoglou,Xihao Li,Zilin Li,Xiuwen Zheng,Jill Moore,Abhijith Asok,Sushant Kumar,Elizabeth Blue,Steven Buyske,Nancy J. Cox,Adam Felsenfeld,Mark Gerstein,Eimear E. Kenny,Bingshan Li,Tara C. Matise,Anthony A. Philippakis,Heidi L. Rehm,Heidi J. Sofia,Grace Snyder,Zhiping Weng,Benjamin M. Neale,Shamil R. Sunyaev,Xihong Lin +23 more
TL;DR: The Functional Annotation of Variants Online Resources (FAVOR) is developed, a comprehensive online multi-faceted portal with summarization and visualization of all possible 9 billion single nucleotide variants across the genome, and allows for rapid variant-, gene-, and region-level online queries.
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Establishing a Global Standard for Wearable Devices in Sport and Fitness: Perspectives from the New England Chapter of the American College of Sports Medicine Members.
Garrett I. Ash,Matthew Stults-Kolehmainen,Michael A. Busa,Robert Gregory,Carol Ewing Garber,Jason Liu,Mark Gerstein,José A. Casajús,A. González-Agüero,Demitri Constantinou,Michael Geistlinger,Fergus M. Guppy,Fabio Pigozzi,Yannis P. Pitsiladis +13 more
TL;DR: The round table participants perceived the quality assurance standard to be important, but identified some practical process challenges that included the broad scope and complexity of the device universe, the need for a multiphase testing pathway, and the associated fees for product evaluation.
Journal ArticleDOI
Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation
Paul R. Muir,Shantao Li,Shaoke Lou,Daifeng Wang,Daniel Spakowicz,Leonidas Salichos,Jing Zhang,George M. Weinstock,Farren J. Isaacs,Joel Rozowsky,Mark Gerstein +10 more
TL;DR: The number of faculty position hires at 51 US universities in 3-year bins and the recent increase in hiring coincides with the explosion in sequencing data.
Posted ContentDOI
Enhanced Transcriptome Maps from Multiple Mouse Tissues Reveal Evolutionary Constraint in Gene Expression for Thousands of Genes
Dmitri D. Pervouchine,Sarah Djebali,Alessandra Breschi,Carrie A. Davis,Pablo Prieto Barja,Alexander Dobin,Andrea Tanzer,Julien Lagarde,Chris Zaleski,Lei Hoon See,Meagan Fastuca,Jorg Drenkow,Huaien Wang,Giovanni Bussotti,Baikang Pei,Suganthi Balasubramanian,Jean Monlong,Arif Harmanci,Mark Gerstein,Michael A. Beer,Cedric Notredame,Roderic Guigó,Thomas R. Gingeras +22 more
TL;DR: This article characterized the transcriptional profiles of a large and heterogeneous collection of mouse tissues, augmenting the mouse transcriptome with thousands of novel transcript candidates, and revealed a distinct class of genes with levels of expression across cell types and species, that have been constrained early in vertebrate evolution.