Mark Gerstein

TL;DR: This paper illustrates the usefulness of XML in representing and interoperating genomic data between two different data sources (Snyder's laboratory at Yale and SGD at Stanford) and compares the locations of transposon insertions with the chromosomal locations of the yeast open reading frames stored in SGD.

TL;DR: This chapter will describe the social process of creating standards within academic science, and outline some of the legal concerns -particularly related to antitrust and intellectual property issues, making some suggestions that might assist the regulation of difficulties of a legal nature in standardizing data and prevent a legal morass from arising out creating and setting standards for the Semantic Web.

TL;DR: This work presents a framework to identify driver genes using a dynamics-based search of mutational hotspots in cancer-associated genes using the TCGA pan-cancer atlas missense mutation catalog.

TL;DR: In this article, the authors report that, despite not containing explicit variant information, a list of genes known to be allele-specific in an individual is enough to recover key variants and link the individuals back to their genotypes and phenotypes.

TL;DR: This study provides a knowledge base of genes characterising the responses to recombinant human erythropoietin through cross-platform comparison and validation and shows that total RNA sequencing combined with DNB-seq produced a multitude of genes of biological relevance and significance in response to recombination.