M
Mark Gerstein
Researcher at Yale University
Publications - 802
Citations - 172183
Mark Gerstein is an academic researcher from Yale University. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 168, co-authored 751 publications receiving 149578 citations. Previous affiliations of Mark Gerstein include Rutgers University & Structural Genomics Consortium.
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Journal ArticleDOI
Identification of a Disease-Defining Gene Fusion in Epithelioid Hemangioendothelioma
Munir R. Tanas,Andrea Sboner,Andre M. Oliveira,Michele R. Erickson-Johnson,Jessica Hespelt,Philip J. Hanwright,John G. Flanagan,Yuling Luo,Kerry Fenwick,Rachael Natrajan,Costas Mitsopoulos,Marketa Zvelebil,Benjamin Hoch,Sharon W. Weiss,Maria Debiec-Rychter,Raf Sciot,Robert B. West,Alexander J. Lazar,Alan Ashworth,Jorge S. Reis-Filho,Christopher J. Lord,Mark Gerstein,Mark A. Rubin,Brian P. Rubin +23 more
TL;DR: The authors suggest that the chimeric WWTR1/CAMTA1 transcription factor may represent a therapeutic target for EHE-specific drugs and initiate an ill-suited and ill-timed transcriptional program that may play a role in cancer biology.
Journal ArticleDOI
The transcriptional activity of human Chromosome 22
John L. Rinn,Ghia Euskirchen,Paul Bertone,Rebecca Martone,Nicholas M. Luscombe,Stephen Hartman,Paul M. Harrison,F. Kenneth Nelson,Perry L. Miller,Mark Gerstein,Sherman M. Weissman,Michael Snyder +11 more
TL;DR: A DNA microarray representing nearly all of the unique sequences of human Chromosome 22 was constructed and used to measure global-transcriptional activity in placental poly(A)(+) RNA and revealed twice as many transcribed bases as have been reported previously.
Journal ArticleDOI
Structural proteomics of an archaeon.
Dinesh Christendat,Adelinda Yee,Akil Dharamsi,Yuval Kluger,Alexei Savchenko,John R. Cort,Valerie Booth,Cameron D. Mackereth,Vivian Saridakis,Irena Ekiel,Guennadi Kozlov,Karen L. Maxwell,Ning Wu,Lawrence P. McIntosh,Kalle Gehring,Michael A. Kennedy,Alan R. Davidson,Emil F. Pai,Emil F. Pai,Mark Gerstein,Aled M. Edwards,Aled M. Edwards,Cheryl H. Arrowsmith +22 more
TL;DR: Of the first 10 structures determined, several provided clues to biochemical functions that were not detectable from sequence analysis, and in many cases these putative functions could be readily confirmed by biochemical methods, demonstrating that structural proteomics is feasible and can play a central role in functional genomics.
A unified statistical framework for sequence comparison and structure comparison (sequence analysisystructure analysisyfold familyydatabase statisticsyprotein evolution)
Michael Levitt,Mark Gerstein +1 more
TL;DR: In this article, an approach for assessing the significance of sequence and structure comparisons by using nearly identical statistical formalisms for both se- quence and structure is presented. But the approach is restricted to protein sequences and does not consider protein structures.
Journal ArticleDOI
Conformational changes associated with protein-protein interactions.
TL;DR: Motions related to protein-protein binding events can be surveyed from the perspective of the Database of Macromolecular Movements, whereby proteins are found to simultaneously exist in populations of diverse conformations.